Information for 5-ACGAGTGTCT (Motif 33)

T C G A A G T C C T A G T G C A A T C G C A G T A T C G A G C T T G A C C G A T
Reverse Opposite:
C G T A A C T G T C G A T A G C G T C A A T G C A C G T G A T C T C A G A G C T
p-value:1e-9
log p-value:-2.141e+01
Information Content per bp:1.676
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif2.76%
Number of Background Sequences with motif237.2
Percentage of Background Sequences with motif0.49%
Average Position of motif in Targets50.1 +/- 25.9bp
Average Position of motif in Background50.6 +/- 31.7bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:ACGAGTGTCT
TTRAGTGSYK
 T C G A A G T C C T A G T G C A A T C G C A G T A T C G A G C T T G A C C G A T
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.63
Offset:2
Orientation:forward strand
Alignment:ACGAGTGTCT--
--VBSYGTCTGG
 T C G A A G T C C T A G T G C A A T C G C A G T A T C G A G C T T G A C C G A T A C G T A C G T
A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.63
Offset:4
Orientation:forward strand
Alignment:ACGAGTGTCT--
----CTGTCTGG
 T C G A A G T C C T A G T G C A A T C G C A G T A T C G A G C T T G A C C G A T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:ACGAGTGTCT
TTGAGTGSTT
 T C G A A G T C C T A G T G C A A T C G C A G T A T C G A G C T T G A C C G A T
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.61
Offset:4
Orientation:forward strand
Alignment:ACGAGTGTCT--
----TWGTCTGV
 T C G A A G T C C T A G T G C A A T C G C A G T A T C G A G C T T G A C C G A T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

NKX2-8/MA0673.1/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-ACGAGTGTCT
NTCAAGTGG--
 A C G T T C G A A G T C C T A G T G C A A T C G C A G T A T C G A G C T T G A C C G A T
A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:7
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-ACGAGTGTCT
CTYRAGTGSY-
 A C G T T C G A A G T C C T A G T G C A A T C G C A G T A T C G A G C T T G A C C G A T
A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C A C G T

HEY2/MA0649.1/Jaspar

Match Rank:8
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-ACGAGTGTCT
GGCACGTGNC-
 A C G T T C G A A G T C C T A G T G C A A T C G C A G T A T C G A G C T T G A C C G A T
A T C G T C A G T A G C C T G A A T G C A C T G A G C T A C T G A G C T G A T C A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:ACGAGTGTCT-------
NNTNNTGTCTGGNNTNG
 T C G A A G T C C T A G T G C A A T C G C A G T A T C G A G C T T G A C C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

CLOCK/MA0819.1/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-ACGAGTGTCT
AACACGTGTT-
 A C G T T C G A A G T C C T A G T G C A A T C G C A G T A T C G A G C T T G A C C G A T
C T G A T C G A G T A C T C G A G A T C C T A G A C G T A C T G A G C T G A C T A C G T