Information for 6-CHTGTCGAAHAAT (Motif 16)

A G T C G T C A A C G T A C T G G C A T A G T C A C T G G T C A C G T A G A T C C G T A C G T A A C G T
Reverse Opposite:
C G T A A C G T A C G T C A T G A C G T A C G T G T A C C T A G C G T A A G T C C G T A C A G T A C T G
p-value:1e-11
log p-value:-2.555e+01
Information Content per bp:1.806
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets61.2 +/- 17.2bp
Average Position of motif in Background53.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0065.1_Sox15_1/Jaspar

Match Rank:1
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CHTGTCGAAHAAT------
--TAGTGAACAATAGATTT
 A G T C G T C A A C G T A C T G G C A T A G T C A C T G G T C A C G T A G A T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C A T C T A G C A T G C G A T C A T G C T G A C G T A G A T C C G T A C G T A G C A T C G T A C T A G C T G A A G C T G C A T A C G T

PB0070.1_Sox30_1/Jaspar

Match Rank:2
Score:0.64
Offset:3
Orientation:forward strand
Alignment:CHTGTCGAAHAAT------
---AATGAACAATGGAATT
 A G T C G T C A A C G T A C T G G C A T A G T C A C T G G T C A C G T A G A T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A G C A T C A G T A T C G T C G A C G T A A G T C G C T A C T G A C G A T C A T G T C A G G C T A G T C A G A C T G A C T

PB0073.1_Sox7_1/Jaspar

Match Rank:3
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CHTGTCGAAHAAT---------
AATAAAGAACAATAGAATTTCA
 A G T C G T C A A C G T A C T G G C A T A G T C A C T G G T C A C G T A G A T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G T C A G C T A A C G T C T G A G C T A C G T A C T A G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C T A G A C T G C A T G C A T A G T C G C T A

PB0074.1_Sox8_1/Jaspar

Match Rank:4
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CHTGTCGAAHAAT------
--TNNAGAACAATANATNN
 A G T C G T C A A C G T A C T G G C A T A G T C A C T G G T C A C G T A G A T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C A T G C T A G T C A C G T A C A T G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C A T G T C A G T A C

Sox5/MA0087.1/Jaspar

Match Rank:5
Score:0.64
Offset:6
Orientation:reverse strand
Alignment:CHTGTCGAAHAAT
------NAACAAT
 A G T C G T C A A C G T A C T G G C A T A G T C A C T G G T C A C G T A G A T C C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C G T A C T G A A G T C C G T A G T C A A C G T

PB0173.1_Sox21_2/Jaspar

Match Rank:6
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CHTGTCGAAHAAT-----
-NNNNNGAACAATTGANN
 A G T C G T C A A C G T A C T G G C A T A G T C A C T G G T C A C G T A G A T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A G C T G T C A C T A G G T A C A C T G T A C G T C G A C G T A A T G C C G T A T C G A G C A T C G A T T A C G T C G A A G C T A C G T

PB0063.1_Sox13_1/Jaspar

Match Rank:7
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CHTGTCGAAHAAT-----
--TTAAGAACAATAAATT
 A G T C G T C A A C G T A C T G G C A T A G T C A C T G G T C A C G T A G A T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T G A C T C G T A C T G A C A T G C T G A C G T A G A T C C G T A C T G A G C A T C G T A C G T A C G A T G C A T G C A T

MF0011.1_HMG_class/Jaspar

Match Rank:8
Score:0.63
Offset:7
Orientation:reverse strand
Alignment:CHTGTCGAAHAAT
-------AACAAT
 A G T C G T C A A C G T A C T G G C A T A G T C A C T G G T C A C G T A G A T C C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A C G T A G A T C C T G A T G C A C G A T

PB0072.1_Sox5_1/Jaspar

Match Rank:9
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CHTGTCGAAHAAT-----
--TTTAGAACAATAAAAT
 A G T C G T C A A C G T A C T G G C A T A G T C A C T G G T C A C G T A G A T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T G C A T C A G T C T G A C T A G T C G A C G T A A G T C C G T A C G T A G C A T C G T A C T G A C G T A G C T A C G A T

PB0183.1_Sry_2/Jaspar

Match Rank:10
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CHTGTCGAAHAAT-----
-TCACGGAACAATAGGTG
 A G T C G T C A A C G T A C T G G C A T A G T C A C T G G T C A C G T A G A T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G A C T G A T C C G T A G T A C C A T G T C A G T G C A C G T A A G T C C T G A C G T A G C A T C T G A C T A G T C A G G A C T T A C G