Information for 3-CAGCCGATTA (Motif 9)

G T A C G T C A A C T G A G T C A G T C A C T G T G C A A C G T A C G T C T G A
Reverse Opposite:
A G C T C G T A C G T A A C G T G T A C A C T G A C T G A G T C A C G T A C T G
p-value:1e-10
log p-value:-2.455e+01
Information Content per bp:1.871
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.77%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets51.8 +/- 30.9bp
Average Position of motif in Background41.3 +/- 16.6bp
Strand Bias (log2 ratio + to - strand density)-2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BSX/MA0876.1/Jaspar

Match Rank:1
Score:0.68
Offset:3
Orientation:forward strand
Alignment:CAGCCGATTA-
---CCAATTAA
 G T A C G T C A A C T G A G T C A G T C A C T G T G C A A C G T A C G T C T G A A C G T
A C G T A C G T A C G T T A G C G A T C T G C A T C G A A C G T C G A T C G T A T C G A

OTX1/MA0711.1/Jaspar

Match Rank:2
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:CAGCCGATTA-
---CGGATTAN
 G T A C G T C A A C T G A G T C A G T C A C T G T G C A A C G T A C G T C T G A A C G T
A C G T A C G T A C G T T A G C T A C G A T C G G T C A A C G T G C A T C G T A C T G A

VENTX/MA0724.1/Jaspar

Match Rank:3
Score:0.67
Offset:2
Orientation:forward strand
Alignment:CAGCCGATTA-
--ACCGATTAG
 G T A C G T C A A C T G A G T C A G T C A C T G T G C A A C G T A C G T C T G A A C G T
A C G T A C G T C G T A T G A C G A T C T C A G G T C A A C G T A C G T C G T A C T A G

GSC2/MA0891.1/Jaspar

Match Rank:4
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CAGCCGATTA--
--GNGGATTAGN
 G T A C G T C A A C T G A G T C A G T C A C T G T G C A A C G T A C G T C T G A A C G T A C G T
A C G T A C G T C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G

Barhl1/MA0877.1/Jaspar

Match Rank:5
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CAGCCGATTA--
--NNCAATTANN
 G T A C G T C A A C T G A G T C A G T C A C T G T G C A A C G T A C G T C T G A A C G T A C G T
A C G T A C G T T C G A T A C G G A T C T C G A G C T A G A C T G C A T C G T A C T A G T A G C

BARX1/MA0875.1/Jaspar

Match Rank:6
Score:0.65
Offset:3
Orientation:forward strand
Alignment:CAGCCGATTA-
---GCAATTAG
 G T A C G T C A A C T G A G T C A G T C A C T G T G C A A C G T A C G T C T G A A C G T
A C G T A C G T A C G T T C A G G A T C T G C A T G C A A C G T A C G T C G T A T C A G

PH0005.1_Barhl1/Jaspar

Match Rank:7
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CAGCCGATTA----
AACAACCAATTAATTC
 A C G T A C G T G T A C G T C A A C T G A G T C A G T C A C T G T G C A A C G T A C G T C T G A A C G T A C G T A C G T A C G T
G T C A C T G A G T A C T C G A C T G A A T G C G A T C C T G A G C T A A C G T G A C T C G T A C T G A A C G T C G A T G A T C

BARHL2/MA0635.1/Jaspar

Match Rank:8
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CAGCCGATTA--
--ANCGTTTANN
 G T A C G T C A A C T G A G T C A G T C A C T G T G C A A C G T A C G T C T G A A C G T A C G T
A C G T A C G T C T G A A G T C G A T C C T A G G C A T A C G T C G A T C G T A C T A G A T G C

TFAP4/MA0691.1/Jaspar

Match Rank:9
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CAGCCGATTA
AACAGCTGAT--
 A C G T A C G T G T A C G T C A A C T G A G T C A G T C A C T G T G C A A C G T A C G T C T G A
T G C A G C T A A G T C G T C A A T C G T A G C G A C T A T C G C G T A A G C T A C G T A C G T

Crx/MA0467.1/Jaspar

Match Rank:10
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CAGCCGATTA-
AAGAGGATTAG
 G T A C G T C A A C T G A G T C A G T C A C T G T G C A A C G T A C G T C T G A A C G T
T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G