Information for 7-TCMCGCCTGCCCGCCA (Motif 28)

A G C T A T G C T G C A A T G C A C T G A T G C A G T C C G A T A C T G A T G C A G T C A G T C A C T G A T G C A G T C G T C A
Reverse Opposite:
A C G T A C T G A T C G G T A C A C T G C T A G A T C G A G T C C G T A C T A G T A C G A G T C A T C G A C G T A T C G C T G A
p-value:1e-7
log p-value:-1.834e+01
Information Content per bp:1.784
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.64%
Number of Background Sequences with motif4.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets49.9 +/- 25.9bp
Average Position of motif in Background57.1 +/- 9.7bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NRF1/MA0506.1/Jaspar

Match Rank:1
Score:0.60
Offset:2
Orientation:forward strand
Alignment:TCMCGCCTGCCCGCCA
--GCGCCTGCGCA---
 A G C T A T G C T G C A A T G C A C T G A T G C A G T C C G A T A C T G A T G C A G T C A G T C A C T G A T G C A G T C G T C A
A C G T A C G T T C A G G T A C T C A G A T G C T G A C A C G T A C T G A G T C A T C G G T A C T C G A A C G T A C G T A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:2
Score:0.60
Offset:4
Orientation:forward strand
Alignment:TCMCGCCTGCCCGCCA-----
----TACGCCCCGCCACTCTG
 A G C T A T G C T G C A A T G C A C T G A T G C A G T C C G A T A C T G A T G C A G T C A G T C A C T G A T G C A G T C G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G

E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer

Match Rank:3
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:TCMCGCCTGCCCGCCA--
------TTTCCCGCCMAV
 A G C T A T G C T G C A A T G C A C T G A T G C A G T C C G A T A C T G A T G C A G T C A G T C A C T G A T G C A G T C G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T G A C T A C G T A T G C A T G C A G T C A C T G A T G C T A G C G T A C T G C A T G A C

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:4
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TCMCGCCTGCCCGCCA
GTCATGCHTGRCTGS--
 A C G T A G C T A T G C T G C A A T G C A C T G A T G C A G T C C G A T A C T G A T G C A G T C A G T C A C T G A T G C A G T C G T C A
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T A C G T

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:5
Score:0.58
Offset:7
Orientation:reverse strand
Alignment:TCMCGCCTGCCCGCCA-
-------TTCCCGCCWG
 A G C T A T G C T G C A A T G C A C T G A T G C A G T C C G A T A C T G A T G C A G T C A G T C A C T G A T G C A G T C G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A T G C A T G C A G T C A C T G A G T C A T G C G C T A A T C G

E2F4/MA0470.1/Jaspar

Match Rank:6
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:TCMCGCCTGCCCGCCA
-----NNTTCCCGCCC
 A G C T A T G C T G C A A T G C A C T G A T G C A G T C C G A T A C T G A T G C A G T C A G T C A C T G A T G C A G T C G T C A
A C G T A C G T A C G T A C G T A C G T A G T C A G T C A G C T A G C T A T G C A T G C A G T C A C T G A T G C A T G C T G A C

THAP1/MA0597.1/Jaspar

Match Rank:7
Score:0.57
Offset:6
Orientation:forward strand
Alignment:TCMCGCCTGCCCGCCA
------CTGCCCGCA-
 A G C T A T G C T G C A A T G C A C T G A T G C A G T C C G A T A C T G A T G C A G T C A G T C A C T G A T G C A G T C G T C A
A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T

E2F6/MA0471.1/Jaspar

Match Rank:8
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:TCMCGCCTGCCCGCCA
-----NCTTCCCGCCC
 A G C T A T G C T G C A A T G C A C T G A T G C A G T C C G A T A C T G A T G C A G T C A G T C A C T G A T G C A G T C G T C A
A C G T A C G T A C G T A C G T A C G T A G T C A G T C A G C T A C G T A T G C A G T C A G T C C A T G A G T C A G T C G A T C

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TCMCGCCTGCCCGCCA
NGTCACGCTTGGCTGC--
 A C G T A C G T A G C T A T G C T G C A A T G C A C T G A T G C A G T C C G A T A C T G A T G C A G T C A G T C A C T G A T G C A G T C G T C A
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:10
Score:0.54
Offset:6
Orientation:forward strand
Alignment:TCMCGCCTGCCCGCCA
------ATGCCCACC-
 A G C T A T G C T G C A A T G C A C T G A T G C A G T C C G A T A C T G A T G C A G T C A G T C A C T G A T G C A G T C G T C A
A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C A C G T