Information for 19-GAGATACTGGCCC (Motif 36)

A C T G C G T A A C T G C G T A A C G T C G T A A G T C A C G T A C T G A C T G A G T C A G T C A G T C
Reverse Opposite:
A C T G A C T G A C T G A G T C A G T C C G T A A C T G A C G T C G T A A C G T A G T C A C G T A G T C
p-value:1e-4
log p-value:-1.117e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.35%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets50.2 +/- 26.9bp
Average Position of motif in Background77.4 +/- 18.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GAGATACTGGCCC-
---NNACTTGCCTT
 A C T G C G T A A C T G C G T A A C G T C G T A A G T C A C G T A C T G A C T G A G T C A G T C A G T C A C G T
A C G T A C G T A C G T T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T

GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:2
Score:0.51
Offset:1
Orientation:forward strand
Alignment:GAGATACTGGCCC
-AGATAASR----
 A C T G C G T A A C T G C G T A A C G T C G T A A G T C A C G T A C T G A C T G A G T C A G T C A G T C
A C G T G C T A A T C G G C T A G A C T G C T A T C G A T A G C T C G A A C G T A C G T A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.50
Offset:2
Orientation:reverse strand
Alignment:GAGATACTGGCCC
--GTTAATGGCC-
 A C T G C G T A A C T G C G T A A C G T C G T A A G T C A C G T A C T G A C T G A G T C A G T C A G T C
A C G T A C G T A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:4
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-GAGATACTGGCCC--
TGACCCAGTGACCTAC
 A C G T A C T G C G T A A C T G C G T A A C G T C G T A A G T C A C G T A C T G A C T G A G T C A G T C A G T C A C G T A C G T
G C A T T A C G G C T A A T G C G T A C A G T C T G C A T A C G C G A T C A T G T G C A T G A C G A T C G A C T T C G A T A G C

PB0051.1_Osr2_1/Jaspar

Match Rank:5
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--GAGATACTGGCCC-
CNNNGCTACTGTANNN
 A C G T A C G T A C T G C G T A A C T G C G T A A C G T C G T A A G T C A C G T A C T G A C T G A G T C A G T C A G T C A C G T
G A T C C G A T A C G T C G A T T C A G A G T C A G C T G C T A A G T C A G C T C A T G A C G T C G T A A G T C C G T A C G A T

PB0050.1_Osr1_1/Jaspar

Match Rank:6
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--GAGATACTGGCCC-
TNNTGCTACTGTNNNN
 A C G T A C G T A C T G C G T A A C T G C G T A A C G T C G T A A G T C A C G T A C T G A C T G A G T C A G T C A G T C A C G T
G A C T C G A T A C G T C G A T T C A G A G T C A G C T G C T A A G T C A G C T C T A G A C G T C G T A G C T A C G T A C G A T

NFIC/MA0161.1/Jaspar

Match Rank:7
Score:0.50
Offset:6
Orientation:forward strand
Alignment:GAGATACTGGCCC
------TTGGCA-
 A C T G C G T A A C T G C G T A A C G T C G T A A G T C A C G T A C T G A C T G A G T C A G T C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T

PB0127.1_Gata6_2/Jaspar

Match Rank:8
Score:0.49
Offset:-4
Orientation:reverse strand
Alignment:----GAGATACTGGCCC
NGCTGCGATATCGNCGC
 A C G T A C G T A C G T A C G T A C T G C G T A A C T G C G T A A C G T C G T A A G T C A C G T A C T G A C T G A G T C A G T C A G T C
G T A C C T A G T A G C A C G T T A C G G T A C C A T G T G C A C A G T G T C A A C G T G T A C C A T G A G T C T A G C T A C G G T A C

NFIX/MA0671.1/Jaspar

Match Rank:9
Score:0.49
Offset:5
Orientation:reverse strand
Alignment:GAGATACTGGCCC-
-----NTTGGCANN
 A C T G C G T A A C T G C G T A A C G T C G T A A G T C A C G T A C T G A C T G A G T C A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

Gata4/MA0482.1/Jaspar

Match Rank:10
Score:0.49
Offset:-2
Orientation:reverse strand
Alignment:--GAGATACTGGCCC
NNGAGATAAGA----
 A C G T A C G T A C T G C G T A A C T G C G T A A C G T C G T A A G T C A C G T A C T G A C T G A G T C A G T C A G T C
T C A G C T A G T A C G C G T A A C T G C G T A A C G T C G T A C T G A T A C G T C G A A C G T A C G T A C G T A C G T