Information for 2-TGGCATTAATKAA (Motif 8)

C G A T C T A G T A C G G T A C C G T A A C G T A C G T C G T A G T C A A C G T C A G T C T G A G T C A
Reverse Opposite:
A C G T A G C T G T C A C G T A A C G T C G A T T C G A C G T A A C G T A C T G A T G C A G T C C G T A
p-value:1e-8
log p-value:-1.988e+01
Information Content per bp:1.750
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.62%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets63.8 +/- 10.0bp
Average Position of motif in Background42.8 +/- 23.8bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxd8/MA0910.1/Jaspar

Match Rank:1
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-TGGCATTAATKAA---
NAGCCATTAATTANTTA
 A C G T C G A T C T A G T A C G G T A C C G T A A C G T A C G T C G T A G T C A A C G T C A G T C T G A G T C A A C G T A C G T A C G T
C G A T G C T A C T A G G A T C G A T C C T G A C G A T G C A T C G T A C G T A C G A T C A G T C T G A G C A T G A C T C G A T G T C A

PH0080.1_Hoxd8/Jaspar

Match Rank:2
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-TGGCATTAATKAA---
NAGCCATTAATTANTTA
 A C G T C G A T C T A G T A C G G T A C C G T A A C G T A C G T C G T A G T C A A C G T C A G T C T G A G T C A A C G T A C G T A C G T
C G A T G C T A C T A G G A T C G A T C C T G A C G A T G C A T C G T A C G T A C G A T C A G T C T G A G C A T G A C T C G A T G T C A

PH0093.1_Lhx3/Jaspar

Match Rank:3
Score:0.73
Offset:1
Orientation:forward strand
Alignment:TGGCATTAATKAA-----
-GAAATTAATTAAATAAT
 C G A T C T A G T A C G G T A C C G T A A C G T A C G T C G T A G T C A A C G T C A G T C T G A G T C A A C G T A C G T A C G T A C G T A C G T
A C G T T A C G C G A T G T C A T C G A G A C T G A C T C T G A C G T A C G A T A G C T C T G A C T G A C G T A C G A T G T C A G T C A A C G T

PH0019.1_Dbx2/Jaspar

Match Rank:4
Score:0.73
Offset:0
Orientation:forward strand
Alignment:TGGCATTAATKAA---
TTTAATTAATTAATTC
 C G A T C T A G T A C G G T A C C G T A A C G T A C G T C G T A G T C A A C G T C A G T C T G A G T C A A C G T A C G T A C G T
A C G T C A G T G A C T G T C A C G T A G C A T G A C T C G T A C G T A C G A T C A G T C T G A C G T A A C G T G C A T G T A C

PH0095.1_Lhx5/Jaspar

Match Rank:5
Score:0.72
Offset:1
Orientation:forward strand
Alignment:TGGCATTAATKAA-----
-CGAATTAATTAAATACT
 C G A T C T A G T A C G G T A C C G T A A C G T A C G T C G T A G T C A A C G T C A G T C T G A G T C A A C G T A C G T A C G T A C G T A C G T
A C G T T A G C C T A G G C T A C T G A G A C T G A C T T C G A C G T A C G A T A C G T C T G A C T G A G C T A G C A T G T C A G T A C A G C T

PH0150.1_Pou4f3/Jaspar

Match Rank:6
Score:0.71
Offset:0
Orientation:forward strand
Alignment:TGGCATTAATKAA---
AGTTATTAATGAGGTC
 C G A T C T A G T A C G G T A C C G T A A C G T A C G T C G T A G T C A A C G T C A G T C T G A G T C A A C G T A C G T A C G T
G C T A T C A G C A G T G C A T C G T A G A C T C G A T C G T A C G T A G A C T C A T G G T C A C T A G A C T G G A C T G A T C

PH0153.1_Prop1/Jaspar

Match Rank:7
Score:0.71
Offset:1
Orientation:forward strand
Alignment:TGGCATTAATKAA-----
-CGAATTAATTAAGAAAC
 C G A T C T A G T A C G G T A C C G T A A C G T A C G T C G T A G T C A A C G T C A G T C T G A G T C A A C G T A C G T A C G T A C G T A C G T
A C G T T G A C T C A G T G C A T C G A G A C T G A C T C G T A C G T A G A C T A C G T C T G A C T G A A C T G C G T A C G T A C T G A G A T C

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:8
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:TGGCATTAATKAA
RGCCATYAATCA-
 C G A T C T A G T A C G G T A C C G T A A C G T A C G T C G T A G T C A A C G T C A G T C T G A G T C A
C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A A C G T

PH0159.1_Rhox6/Jaspar

Match Rank:9
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:TGGCATTAATKAA----
NNGCATTAATTAANGCA
 C G A T C T A G T A C G G T A C C G T A A C G T A C G T C G T A G T C A A C G T C A G T C T G A G T C A A C G T A C G T A C G T A C G T
C T A G C G T A A T C G T G A C T C G A G A C T G A C T G C T A T C G A A C G T C G A T C G T A C T G A A C T G C A T G A G T C C G T A

PH0091.1_Lhx1/Jaspar

Match Rank:10
Score:0.70
Offset:1
Orientation:forward strand
Alignment:TGGCATTAATKAA-----
-CGAATTAATTAATAATG
 C G A T C T A G T A C G G T A C C G T A A C G T A C G T C G T A G T C A A C G T C A G T C T G A G T C A A C G T A C G T A C G T A C G T A C G T
A C G T T G A C T C A G C G T A C G T A G A C T G A C T T C G A C G T A C G A T A C G T C T G A C T G A G C A T G C T A G C T A G A C T A C T G