Information for 11-CGTGATTTADAGC (Motif 11)

G A T C T A C G A C G T A C T G C T G A C A G T A C G T A C G T T C G A C G T A C G T A A C T G G T A C
Reverse Opposite:
A C T G A G T C A C G T G A C T A C G T T C G A C G T A G C T A G A C T A G T C G T C A A T G C C A T G
p-value:1e-10
log p-value:-2.356e+01
Information Content per bp:1.717
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.23%
Number of Background Sequences with motif26.8
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets37.4 +/- 24.6bp
Average Position of motif in Background44.6 +/- 24.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9/MA0485.1/Jaspar

Match Rank:1
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:CGTGATTTADAGC-
-NTGATTTATGGCC
 G A T C T A C G A C G T A C T G C T G A C A G T A C G T A C G T T C G A C G T A C G T A A C T G G T A C A C G T
A C G T T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:2
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:CGTGATTTADAGC-
--TGATTTATGGCC
 G A T C T A C G A C G T A C T G C T G A C A G T A C G T A C G T T C G A C G T A C G T A A C T G G T A C A C G T
A C G T A C G T C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

Gfi1/MA0038.1/Jaspar

Match Rank:3
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CGTGATTTADAGC
CNGTGATTTN----
 A C G T G A T C T A C G A C G T A C T G C T G A C A G T A C G T A C G T T C G A C G T A C G T A A C T G G T A C
A T G C C G T A A T C G C G A T A C T G G C T A A C G T A C G T A C G T C T A G A C G T A C G T A C G T A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:4
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:CGTGATTTADAGC-
--TGATTTATGGCC
 G A T C T A C G A C G T A C T G C T G A C A G T A C G T A C G T T C G A C G T A C G T A A C T G G T A C A C G T
A C G T A C G T C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C

Hoxa9/MA0594.1/Jaspar

Match Rank:5
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CGTGATTTADAGC
--TGATTTATGGC
 G A T C T A C G A C G T A C T G C T G A C A G T A C G T A C G T T C G A C G T A C G T A A C T G G T A C
A C G T A C G T C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:6
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CGTGATTTADAGC-
--TGAGTGACAGSC
 G A T C T A C G A C G T A C T G C T G A C A G T A C G T A C G T T C G A C G T A C G T A A C T G G T A C A C G T
A C G T A C G T C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CGTGATTTADAGC
-NTGATTGACAGN
 G A T C T A C G A C G T A C T G C T G A C A G T A C G T A C G T T C G A C G T A C G T A A C T G G T A C
A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:8
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CGTGATTTADAGC
-BTGABTGACAGS
 G A T C T A C G A C G T A C T G C T G A C A G T A C G T A C G T T C G A C G T A C G T A A C T G G T A C
A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

Gfi1b/MA0483.1/Jaspar

Match Rank:9
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CGTGATTTADAGC
TGCTGTGATTT-----
 A C G T A C G T A C G T G A T C T A C G A C G T A C T G C T G A C A G T A C G T A C G T T C G A C G T A C G T A A C T G G T A C
C G A T C T A G G A T C G C A T A T C G C G A T A C T G T C G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0037.1_Hdx/Jaspar

Match Rank:10
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CGTGATTTADAGC-
TNNNATGATTTCNNCNN
 A C G T A C G T A C G T G A T C T A C G A C G T A C T G C T G A C A G T A C G T A C G T T C G A C G T A C G T A A C T G G T A C A C G T
A C G T C A T G T A G C C T A G C T G A C G A T A T C G G T C A G C A T G C A T A C G T G A T C C A T G G T A C T G A C G A C T G C A T