Information for 1-TGAGMTGASTAGT (Motif 2)

A C G T A C T G C G T A A T C G G T A C A C G T C T A G C T G A A T G C C A G T C G T A A T C G A C G T
Reverse Opposite:
C G T A A T G C A C G T G C T A A T C G A G C T G A T C C G T A A C T G A T G C A C G T A G T C C G T A
p-value:1e-12
log p-value:-2.776e+01
Information Content per bp:1.809
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif3.88%
Number of Background Sequences with motif0.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets52.2 +/- 22.2bp
Average Position of motif in Background55.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0058.1_Hoxb3/Jaspar

Match Rank:1
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TGAGMTGASTAGT----
TGAGCTAATTAGTTGGA
 A C G T A C T G C G T A A T C G G T A C A C G T C T A G C T G A A T G C C A G T C G T A A T C G A C G T A C G T A C G T A C G T A C G T
C G A T T C A G T G C A T A C G A T G C G A C T G T C A C G T A C G A T A C G T C T G A T A C G A G C T C A G T T C A G C T A G C G T A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TGAGMTGASTAGT
TGACCTYA-----
 A C G T A C T G C G T A A T C G G T A C A C G T C T A G C T G A A T G C C A G T C G T A A T C G A C G T
A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T

SREBF2/MA0596.1/Jaspar

Match Rank:3
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TGAGMTGASTAGT
ATGGGGTGAT----
 A C G T A C G T A C T G C G T A A T C G G T A C A C G T C T A G C T G A A T G C C A G T C G T A A T C G A C G T
T C G A A C G T A T C G C T A G A T C G T A C G A C G T A C T G C G T A A G C T A C G T A C G T A C G T A C G T

SREBF1/MA0595.1/Jaspar

Match Rank:4
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-TGAGMTGASTAGT
GTGGGGTGAT----
 A C G T A C G T A C T G C G T A A T C G G T A C A C G T C T A G C T G A A T G C C A G T C G T A A T C G A C G T
T C A G A C G T A T C G C T A G A T C G A T C G A C G T A C T G C G T A A G C T A C G T A C G T A C G T A C G T

PH0081.1_Pdx1/Jaspar

Match Rank:5
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-TGAGMTGASTAGT--
NTGNGCTAATTACCNN
 A C G T A C G T A C T G C G T A A T C G G T A C A C G T C T A G C T G A A T G C C A G T C G T A A T C G A C G T A C G T A C G T
G T C A G A C T A T C G C G T A C T A G A T G C G A C T T G C A G C T A C A G T A C G T C T G A T A G C G A T C A C G T A C G T

PH0045.1_Hoxa1/Jaspar

Match Rank:6
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TGAGMTGASTAGT--
CTGAGCTAATTACCGT
 A C G T A C G T A C T G C G T A A T C G G T A C A C G T C T A G C T G A A T G C C A G T C G T A A T C G A C G T A C G T A C G T
A G T C G A C T C T A G C T G A T C A G A T G C G A C T T G C A C G T A C G A T A C G T C T G A T G A C A G T C A C T G A G C T

Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer

Match Rank:7
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---TGAGMTGASTAGT
NRRTGACGTCAT----
 A C G T A C G T A C G T A C G T A C T G C G T A A T C G G T A C A C G T C T A G C T G A A T G C C A G T C G T A A T C G A C G T
A T G C T C A G T C G A G C A T A C T G C G T A A G T C T C A G G A C T T G A C C G T A A G C T A C G T A C G T A C G T A C G T

Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer

Match Rank:8
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---TGAGMTGASTAGT
NGRTGACGTCAY----
 A C G T A C G T A C G T A C G T A C T G C G T A A T C G G T A C A C G T C T A G C T G A A T G C C A G T C G T A A T C G A C G T
T A G C C T A G T C G A G A C T A C T G C T G A A G T C T C A G G C A T T G A C C T G A A G C T A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:9
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-TGAGMTGASTAGT
GTGACCTT------
 A C G T A C G T A C T G C G T A A T C G G T A C A C G T C T A G C T G A A T G C C A G T C G T A A T C G A C G T
A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:10
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:TGAGMTGASTAGT
TGACCT-------
 A C G T A C T G C G T A A T C G G T A C A C G T C T A G C T G A A T G C C A G T C G T A A T C G A C G T
A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T