Information for 4-GAGGGCTATG (Motif 18)

C T A G C G T A A C T G C T A G A C T G G A T C A C G T C G T A C G A T C T A G
Reverse Opposite:
A G T C C G T A A C G T C G T A C T A G A G T C A G T C A G T C A C G T A G T C
p-value:1e-5
log p-value:-1.376e+01
Information Content per bp:1.825
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif6.80%
Number of Background Sequences with motif238.6
Percentage of Background Sequences with motif0.50%
Average Position of motif in Targets51.9 +/- 25.3bp
Average Position of motif in Background48.6 +/- 30.3bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.29
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GAGGGCTATG--
-AAGGATATNTN
 C T A G C G T A A C T G C T A G A C T G G A T C A C G T C G T A C G A T C T A G A C G T A C G T
A C G T T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:2
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GAGGGCTATG
TTGAGTGSTT--
 A C G T A C G T C T A G C G T A A C T G C T A G A C T G G A T C A C G T C G T A C G A T C T A G
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:3
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GAGGGCTATG
CTYRAGTGSY---
 A C G T A C G T A C G T C T A G C G T A A C T G C T A G A C T G G A T C A C G T C G T A C G A T C T A G
A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C A C G T A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:4
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---GAGGGCTATG
BTBRAGTGSN---
 A C G T A C G T A C G T C T A G C G T A A C T G C T A G A C T G G A T C A C G T C G T A C G A T C T A G
A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T A C G T A C G T

Gata1/MA0035.3/Jaspar

Match Rank:5
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GAGGGCTATG--
-ANAGATAAGAA
 C T A G C G T A A C T G C T A G A C T G G A T C A C G T C G T A C G A T C T A G A C G T A C G T
A C G T C T G A T A G C C G T A A C T G C G T A A C G T C G T A C T G A T C A G T C G A T C G A

Gata4/MA0482.1/Jaspar

Match Rank:6
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GAGGGCTATG-
NNGAGATAAGA
 C T A G C G T A A C T G C T A G A C T G G A T C A C G T C G T A C G A T C T A G A C G T
T C A G C T A G T A C G C G T A A C T G C G T A A C G T C G T A C T G A T A C G T C G A

MZF1(var.2)/MA0057.1/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GAGGGCTATG
GGAGGGGGAA-
 A C G T C T A G C G T A A C T G C T A G A C T G G A T C A C G T C G T A C G A T C T A G
A C T G C A G T G T C A A C T G A C T G A T C G A C T G C A T G C T G A C T G A A C G T

PB0021.1_Gata3_1/Jaspar

Match Rank:8
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----GAGGGCTATG--------
TTTTTAGAGATAAGAAATAAAG
 A C G T A C G T A C G T A C G T C T A G C G T A A C T G C T A G A C T G G A T C A C G T C G T A C G A T C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C A G T G C A T C A G T C G A T C T G A C A T G G C T A A C T G C G T A C G A T G C T A C G T A T A C G T G C A C T G A G C T A A C G T C G T A G T C A T C G A C A T G

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GAGGGCTATG
-AGGCCTNG-
 C T A G C G T A A C T G C T A G A C T G G A T C A C G T C G T A C G A T C T A G
A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T

PB0126.1_Gata5_2/Jaspar

Match Rank:10
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--GAGGGCTATG-----
GACAGAGATATCAGTGT
 A C G T A C G T C T A G C G T A A C T G C T A G A C T G G A T C A C G T C G T A C G A T C T A G A C G T A C G T A C G T A C G T A C G T
T C A G T G C A A G T C G T C A C T A G G T C A C A T G T C G A C A G T G T C A C A G T G A T C C G T A C T A G G A C T A C G T A C G T