Information for 8-CCCTGGHCTGACTAGT (Motif 11)

A G T C A G T C A G T C A C G T A C T G C T A G G A C T A G T C A G C T A T C G C G T A A G T C A G C T C G T A A C T G A G C T
Reverse Opposite:
C T G A G T A C A C G T C T G A A C T G C G A T A T G C C T G A A C T G C A G T A G T C A G T C C G T A A C T G A C T G A C T G
p-value:1e-8
log p-value:-2.021e+01
Information Content per bp:1.817
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif2.91%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.2 +/- 26.5bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:1
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CCCTGGHCTGACTAGT
TGACCTTGACCT-------
 A C G T A C G T A C G T A G T C A G T C A G T C A C G T A C T G C T A G G A C T A G T C A G C T A T C G C G T A A G T C A G C T C G T A A C T G A G C T
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:2
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CCCTGGHCTGACTAGT
TGACCTTGACCT-------
 A C G T A C G T A C G T A G T C A G T C A G T C A C G T A C T G C T A G G A C T A G T C A G C T A T C G C G T A A G T C A G C T C G T A A C T G A G C T
G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0200.1_Zfp187_2/Jaspar

Match Rank:3
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---CCCTGGHCTGACTAGT
GAGCCCTTGTCCCTAA---
 A C G T A C G T A C G T A G T C A G T C A G T C A C G T A C T G C T A G G A C T A G T C A G C T A T C G C G T A A G T C A G C T C G T A A C T G A G C T
A C T G C T G A C T A G G T A C A G T C A G T C G A C T A G C T T C A G G A C T G A T C A G T C G T A C G A C T G C A T T C A G A C G T A C G T A C G T

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:4
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--CCCTGGHCTGACTAGT
TGWCCTCARNTGACC---
 A C G T A C G T A G T C A G T C A G T C A C G T A C T G C T A G G A C T A G T C A G C T A T C G C G T A A G T C A G C T C G T A A C T G A G C T
G C A T T A C G C G T A G T A C A G T C G A C T A G T C T C G A T C A G T C G A C G A T T C A G T G C A G T A C G A T C A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:5
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:CCCTGGHCTGACTAGT
---TGACCTYA-----
 A G T C A G T C A G T C A C G T A C T G C T A G G A C T A G T C A G C T A T C G C G T A A G T C A G C T C G T A A C T G A G C T
A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T

PB0157.1_Rara_2/Jaspar

Match Rank:6
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-CCCTGGHCTGACTAGT
NNCNTGACCCCGCTCT-
 A C G T A G T C A G T C A G T C A C G T A C T G C T A G G A C T A G T C A G C T A T C G C G T A A G T C A G C T C G T A A C T G A G C T
A C G T T G C A T G A C C A G T G A C T T C A G C G T A G T A C G T A C A T G C T A G C T C A G G T A C C A G T G T A C C A G T A C G T

Zfx/MA0146.2/Jaspar

Match Rank:7
Score:0.50
Offset:-4
Orientation:forward strand
Alignment:----CCCTGGHCTGACTAGT
GGGGCCGAGGCCTG------
 A C G T A C G T A C G T A C G T A G T C A G T C A G T C A C G T A C T G C T A G G A C T A G T C A G C T A T C G C G T A A G T C A G C T C G T A A C T G A G C T
A T C G A T C G T A C G C T A G A T G C G A T C A C T G T G C A T C A G A T C G A G T C A G T C A G C T T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:8
Score:0.49
Offset:-5
Orientation:reverse strand
Alignment:-----CCCTGGHCTGACTAGT
GCTGACCTTGAACTN------
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A G T C A C G T A C T G C T A G G A C T A G T C A G C T A T C G C G T A A G T C A G C T C G T A A C T G A G C T
T A C G T G A C G C A T T C A G C T G A A G T C A G T C A G C T C A G T A T C G C T G A T C G A G A T C G A C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T

INSM1/MA0155.1/Jaspar

Match Rank:9
Score:0.48
Offset:-4
Orientation:reverse strand
Alignment:----CCCTGGHCTGACTAGT
CGCCCCCTGACA--------
 A C G T A C G T A C G T A C G T A G T C A G T C A G T C A C G T A C T G C T A G G A C T A G T C A G C T A T C G C G T A A G T C A G C T C G T A A C T G A G C T
G A T C C T A G T G A C A G T C A G T C A T G C A G T C C G A T C A T G T C G A G T A C G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.48
Offset:-3
Orientation:forward strand
Alignment:---CCCTGGHCTGACTAGT-
NAAACCGGTTNNAACCGGTT
 A C G T A C G T A C G T A G T C A G T C A G T C A C G T A C T G C T A G G A C T A G T C A G C T A T C G C G T A A G T C A G C T C G T A A C T G A G C T A C G T
T G A C T C G A C T G A C T G A A T G C G A T C C T A G T A C G G A C T G A C T G A T C T C G A C T G A C T G A A T G C G A T C C T A G A T C G G A C T G A C T