Information for 10-CCCAGCCAGC (Motif 12)

T A G C G T A C A T G C G T C A A T C G A G T C A G T C C G T A A T C G A G T C
Reverse Opposite:
A C T G A T G C C G A T C T A G A C T G A T G C A C G T A T C G A C T G A T C G
p-value:1e-17
log p-value:-4.136e+01
Information Content per bp:1.848
Number of Target Sequences with motif32.0
Percentage of Target Sequences with motif4.04%
Number of Background Sequences with motif15.6
Percentage of Background Sequences with motif0.53%
Average Position of motif in Targets56.6 +/- 22.6bp
Average Position of motif in Background41.0 +/- 17.2bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:CCCAGCCAGC
-CCAGACAG-
 T A G C G T A C A T G C G T C A A T C G A G T C A G T C C G T A A T C G A G T C
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CCCAGCCAGC
-BCAGACWA-
 T A G C G T A C A T G C G T C A A T C G A G T C A G T C C G T A A T C G A G T C
A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T

PB0167.1_Sox13_2/Jaspar

Match Rank:3
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----CCCAGCCAGC--
ANNTNCCCACCCANNAC
 A C G T A C G T A C G T A C G T A C G T T A G C G T A C A T G C G T C A A T C G A G T C A G T C C G T A A T C G A G T C A C G T A C G T
G T C A C G T A C G A T C G A T C G T A G T A C G T A C T A G C C G T A G A T C G T A C G T A C C T G A C T G A G A C T G C T A G A T C

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----CCCAGCCAGC---
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T T A G C G T A C A T G C G T C A A T C G A G T C A G T C C G T A A T C G A G T C A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

PB0164.1_Smad3_2/Jaspar

Match Rank:5
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CCCAGCCAGC---
TACGCCCCGCCACTCTG
 A C G T A C G T A C G T A C G T T A G C G T A C A T G C G T C A A T C G A G T C A G T C C G T A A T C G A G T C A C G T A C G T A C G T
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CCCAGCCAGC
TGCCCAGNHW--
 A C G T A C G T T A G C G T A C A T G C G T C A A T C G A G T C A G T C C G T A A T C G A G T C
C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CCCAGCCAGC
--CAGCC---
 T A G C G T A C A T G C G T C A A T C G A G T C A G T C C G T A A T C G A G T C
A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CCCAGCCAGC-
-CCAGACRSVB
 T A G C G T A C A T G C G T C A A T C G A G T C A G T C C G T A A T C G A G T C A C G T
A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CCCAGCCAGC
---TGCCAA-
 T A G C G T A C A T G C G T C A A T C G A G T C A G T C C G T A A T C G A G T C
A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:10
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CCCAGCCAGC
GGACCACCCACG
 A C G T A C G T T A G C G T A C A T G C G T C A A T C G A G T C A G T C C G T A A T C G A G T C
C T A G A T C G T C G A G T A C A G T C G C T A A T G C G T A C G A T C C G T A T A G C T C A G