Information for 4-CAATATGGAGCACACA (Motif 5)

G T A C G T C A C T G A A C G T C G T A C G A T C T A G A T C G C G T A C T A G G A T C C G T A A G T C C G T A A T G C C T G A
Reverse Opposite:
A G C T A T C G C G A T T A C G C G A T C A T G G A T C C G A T A T G C A G T C C G T A C G A T T G C A A G C T A C G T A C T G
p-value:1e-11
log p-value:-2.661e+01
Information Content per bp:1.718
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.43%
Number of Background Sequences with motif12.9
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets44.8 +/- 24.7bp
Average Position of motif in Background48.6 +/- 26.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CAATATGGAGCACACA
CAAGATGGCGGC----
 G T A C G T C A C T G A A C G T C G T A C G A T C T A G A T C G C G T A C T A G G A T C C G T A A G T C C G T A A T G C C T G A
T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C A C G T A C G T A C G T A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:2
Score:0.53
Offset:5
Orientation:forward strand
Alignment:CAATATGGAGCACACA-----
-----AGCGGCACACACGCAA
 G T A C G T C A C T G A A C G T C G T A C G A T C T A G A T C G C G T A C T A G G A T C C G T A A G T C C G T A A T G C C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

PB0208.1_Zscan4_2/Jaspar

Match Rank:3
Score:0.52
Offset:5
Orientation:forward strand
Alignment:CAATATGGAGCACACA-----
-----CGAAGCACACAAAATA
 G T A C G T C A C T G A A C G T C G T A C G A T C T A G A T C G C G T A C T A G G A T C C G T A A G T C C G T A A T G C C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:CAATATGGAGCACACA
-----GGGAGGACNG-
 G T A C G T C A C T G A A C G T C G T A C G A T C T A G A T C G C G T A C T A G G A T C C G T A A G T C C G T A A T G C C T G A
A C G T A C G T A C G T A C G T A C G T C T A G A C T G A C T G C G T A A C T G A T C G C G T A A T G C A G C T T A C G A C G T

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:5
Score:0.51
Offset:6
Orientation:reverse strand
Alignment:CAATATGGAGCACACA--
------GGACCACCCACG
 G T A C G T C A C T G A A C G T C G T A C G A T C T A G A T C G C G T A C T A G G A T C C G T A A G T C C G T A A T G C C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T A G A T C G T C G A G T A C A G T C G C T A A T G C G T A C G A T C C G T A T A G C T C A G

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:6
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:CAATATGGAGCACACA-
--WYATGCATWATGCAT
 G T A C G T C A C T G A A C G T C G T A C G A T C T A G A T C G C G T A C T A G G A T C C G T A A G T C C G T A A T G C C T G A A C G T
A C G T A C G T C G T A A G C T C G T A A C G T A C T G G T A C C G T A A C G T C G A T C G T A A C G T A C T G A G T C C G T A C G A T

Neurog1/MA0623.1/Jaspar

Match Rank:7
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-CAATATGGAGCACACA
ACCATATGGT-------
 A C G T G T A C G T C A C T G A A C G T C G T A C G A T C T A G A T C G C G T A C T A G G A T C C G T A A G T C C G T A A T G C C T G A
C T G A T A G C T G A C C T G A A C G T T G C A G A C T C A T G A C T G A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:8
Score:0.50
Offset:4
Orientation:forward strand
Alignment:CAATATGGAGCACACA
----ATGCATAATTCA
 G T A C G T C A C T G A A C G T C G T A C G A T C T A G A T C G C G T A C T A G G A T C C G T A A G T C C G T A A T G C C T G A
A C G T A C G T A C G T A C G T G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A

YY1(Zf)/Promoter/Homer

Match Rank:9
Score:0.49
Offset:0
Orientation:forward strand
Alignment:CAATATGGAGCACACA
CAAGATGGCGGC----
 G T A C G T C A C T G A A C G T C G T A C G A T C T A G A T C G C G T A C T A G G A T C C G T A A G T C C G T A A T G C C T G A
T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C A C G T A C G T A C G T A C G T

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:10
Score:0.48
Offset:4
Orientation:forward strand
Alignment:CAATATGGAGCACACA---
----ATGAATWATTCATGA
 G T A C G T C A C T G A A C G T C G T A C G A T C T A G A T C G C G T A C T A G G A T C C G T A A G T C C G T A A T G C C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T C A A C G T C T A G G T C A C G T A G C A T C G T A C G T A G C A T C A G T A G T C C G T A C A G T C T A G C T G A