Information for 4-TCCTGCCAAT (Motif 12)

G C A T A G T C G T A C A G C T A T C G A G T C G T A C G T C A G C T A A C G T
Reverse Opposite:
C G T A C A G T A C G T A C T G A C T G A T G C C T G A C A T G C T A G C G T A
p-value:1e-8
log p-value:-1.881e+01
Information Content per bp:1.839
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif2.32%
Number of Background Sequences with motif130.8
Percentage of Background Sequences with motif0.27%
Average Position of motif in Targets57.8 +/- 27.2bp
Average Position of motif in Background48.0 +/- 26.8bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.75
Offset:1
Orientation:forward strand
Alignment:TCCTGCCAAT-
-GGTGCCAAGT
 G C A T A G T C G T A C A G C T A T C G A G T C G T A C G T C A G C T A A C G T A C G T
A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NFIC/MA0161.1/Jaspar

Match Rank:2
Score:0.75
Offset:3
Orientation:reverse strand
Alignment:TCCTGCCAAT
---TGCCAA-
 G C A T A G T C G T A C A G C T A T C G A G T C G T A C G T C A G C T A A C G T
A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.74
Offset:1
Orientation:forward strand
Alignment:TCCTGCCAAT
-CGTGCCAAG
 G C A T A G T C G T A C A G C T A T C G A G T C G T A C G T C A G C T A A C G T
A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:TCCTGCCAAT
-CTTGGCAA-
 G C A T A G T C G T A C A G C T A T C G A G T C G T A C G T C A G C T A A C G T
A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:5
Score:0.68
Offset:3
Orientation:forward strand
Alignment:TCCTGCCAAT---
---AGCCAATCGG
 G C A T A G T C G T A C A G C T A T C G A G T C G T A C G T C A G C T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

E2F8/MA0865.1/Jaspar

Match Rank:6
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--TCCTGCCAAT
TTTCCCGCCAAA
 A C G T A C G T G C A T A G T C G T A C A G C T A T C G A G T C G T A C G T C A G C T A A C G T
G A C T A G C T A C G T A G T C A G T C A T G C T A C G A G T C T A G C C T G A C G T A G C T A

POL004.1_CCAAT-box/Jaspar

Match Rank:7
Score:0.67
Offset:0
Orientation:forward strand
Alignment:TCCTGCCAAT--
ACTAGCCAATCA
 G C A T A G T C G T A C A G C T A T C G A G T C G T A C G T C A G C T A A C G T A C G T A C G T
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:8
Score:0.67
Offset:1
Orientation:forward strand
Alignment:TCCTGCCAAT---
-SCTGTCAVTCAV
 G C A T A G T C G T A C A G C T A T C G A G T C G T A C G T C A G C T A A C G T A C G T A C G T A C G T
A C G T T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

E2F7/MA0758.1/Jaspar

Match Rank:9
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---TCCTGCCAAT-
TTTTCCCGCCAAAA
 A C G T A C G T A C G T G C A T A G T C G T A C A G C T A T C G A G T C G T A C G T C A G C T A A C G T A C G T
C G A T C G A T A G C T A G C T A T G C A T G C A G T C T C A G A G T C A T G C C G T A C G T A G C T A C G T A

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.66
Offset:1
Orientation:forward strand
Alignment:TCCTGCCAAT---
-NCTGTCAATCAN
 G C A T A G T C G T A C A G C T A T C G A G T C G T A C G T C A G C T A A C G T A C G T A C G T A C G T
A C G T T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A