Information for 6-GAAGCTCAGTCTAGTG (Motif 8)

A C T G T G C A C T G A A C T G A G T C A G C T A G T C G T C A A T C G A C G T A G T C A C G T C T G A A C T G A C G T A C T G
Reverse Opposite:
A G T C G T C A A G T C A G C T C G T A C T A G G T C A A T G C A C G T A C T G C T G A A C T G A G T C A G C T A C G T A G T C
p-value:1e-12
log p-value:-2.799e+01
Information Content per bp:1.883
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.87%
Number of Background Sequences with motif6.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets49.6 +/- 24.5bp
Average Position of motif in Background44.6 +/- 32.9bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL008.1_DCE_S_I/Jaspar

Match Rank:1
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GAAGCTCAGTCTAGTG
NGAAGC-----------
 A C G T A C T G T G C A C T G A A C T G A G T C A G C T A G T C G T C A A T C G A C G T A G T C A C G T C T G A A C T G A C G T A C T G
T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:GAAGCTCAGTCTAGTG
---GCTCGGSCTC---
 A C T G T G C A C T G A A C T G A G T C A G C T A G T C G T C A A T C G A C G T A G T C A C G T C T G A A C T G A C G T A C T G
A C G T A C G T A C G T C T A G G T A C A C G T A T G C C T A G A C T G T A C G A G T C A C G T A G T C A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.52
Offset:6
Orientation:forward strand
Alignment:GAAGCTCAGTCTAGTG
------CTGTCTGG--
 A C T G T G C A C T G A A C T G A G T C A G C T A G T C G T C A A T C G A C G T A G T C A C G T C T G A A C T G A C G T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:4
Score:0.52
Offset:3
Orientation:forward strand
Alignment:GAAGCTCAGTCTAGTG
---GCTCCG-------
 A C T G T G C A C T G A A C T G A G T C A G C T A G T C G T C A A T C G A C G T A G T C A C G T C T G A A C T G A C G T A C T G
A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.49
Offset:6
Orientation:forward strand
Alignment:GAAGCTCAGTCTAGTG
------TWGTCTGV--
 A C T G T G C A C T G A A C T G A G T C A G C T A G T C G T C A A T C G A C G T A G T C A C G T C T G A A C T G A C G T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T

CTCF/MA0139.1/Jaspar

Match Rank:6
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:GAAGCTCAGTCTAGTG----
-TAGCGCCCCCTGGTGGCCA
 A C T G T G C A C T G A A C T G A G T C A G C T A G T C G T C A A T C G A C G T A G T C A C G T C T G A A C T G A C G T A C T G A C G T A C G T A C G T A C G T
A C G T A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

NR4A2/MA0160.1/Jaspar

Match Rank:7
Score:0.48
Offset:1
Orientation:forward strand
Alignment:GAAGCTCAGTCTAGTG
-AAGGTCAC-------
 A C T G T G C A C T G A A C T G A G T C A G C T A G T C G T C A A T C G A C G T A G T C A C G T C T G A A C T G A C G T A C T G
A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.48
Offset:4
Orientation:forward strand
Alignment:GAAGCTCAGTCTAGTG
----VBSYGTCTGG--
 A C T G T G C A C T G A A C T G A G T C A G C T A G T C G T C A A T C G A C G T A G T C A C G T C T G A A C T G A C G T A C T G
A C G T A C G T A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.47
Offset:2
Orientation:reverse strand
Alignment:GAAGCTCAGTCTAGTG
--NGCTN---------
 A C T G T G C A C T G A A C T G A G T C A G C T A G T C G T C A A T C G A C G T A G T C A C G T C T G A A C T G A C G T A C T G
A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:10
Score:0.47
Offset:0
Orientation:forward strand
Alignment:GAAGCTCAGTCTAGTG----
ANAGTGCCACCTGGTGGCCA
 A C T G T G C A C T G A A C T G A G T C A G C T A G T C G T C A A T C G A C G T A G T C A C G T C T G A A C T G A C G T A C T G A C G T A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A