Information for 6-AGATCATAKT (Motif 30)

C G T A A C T G C T G A A C G T T G A C C G T A A C G T C G T A A C T G A C G T
Reverse Opposite:
C G T A G T A C A C G T C G T A A C G T A C T G C G T A A G C T A G T C A C G T
p-value:1e-6
log p-value:-1.397e+01
Information Content per bp:1.900
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif2.68%
Number of Background Sequences with motif142.6
Percentage of Background Sequences with motif0.29%
Average Position of motif in Targets49.6 +/- 31.8bp
Average Position of motif in Background55.9 +/- 26.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:1
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AGATCATAKT
TRAGGTCA----
 A C G T A C G T C G T A A C T G C T G A A C G T T G A C C G T A A C G T C G T A A C T G A C G T
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T

ESRRB/MA0141.3/Jaspar

Match Rank:2
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---AGATCATAKT
TCAAGGTCATA--
 A C G T A C G T A C G T C G T A A C T G C T G A A C G T T G A C C G T A A C G T C G T A A C T G A C G T
G A C T T A G C G C T A T C G A T C A G A T C G A G C T G A T C C T G A G C A T G C T A A C G T A C G T

Tcf7/MA0769.1/Jaspar

Match Rank:3
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AGATCATAKT
AAAGATCAAAGG
 A C G T A C G T C G T A A C T G C T G A A C G T T G A C C G T A A C G T C G T A A C T G A C G T
C T G A C T G A C G T A A T C G C G T A A C G T A T G C C G T A T C G A C G T A C T A G T C A G

LEF1/MA0768.1/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AGATCATAKT---
AAAGATCAAAGGGTT
 A C G T A C G T C G T A A C T G C T G A A C G T T G A C C G T A A C G T C G T A A C T G A C G T A C G T A C G T A C G T
T C G A C T G A C T G A T A C G C G T A G C A T T A G C C G T A C T G A C T G A T C A G T C A G T C A G C G A T G C A T

RORA/MA0071.1/Jaspar

Match Rank:5
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----AGATCATAKT
ATCAAGGTCA----
 A C G T A C G T A C G T A C G T C G T A A C T G C T G A A C G T T G A C C G T A A C G T C G T A A C T G A C G T
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:6
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AGATCATAKT
AGGTCA----
 C G T A A C T G C T G A A C G T T G A C C G T A A C G T C G T A A C T G A C G T
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T

Esrrg/MA0643.1/Jaspar

Match Rank:7
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---AGATCATAKT
TCAAGGTCAT---
 A C G T A C G T A C G T C G T A A C T G C T G A A C G T T G A C C G T A A C G T C G T A A C T G A C G T
G A C T T A G C C T G A T C G A C A T G A T C G C A G T A G T C C T G A G C A T A C G T A C G T A C G T

PB0181.1_Spdef_2/Jaspar

Match Rank:8
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----AGATCATAKT--
GATAACATCCTAGTAG
 A C G T A C G T A C G T A C G T C G T A A C T G C T G A A C G T T G A C C G T A A C G T C G T A A C T G A C G T A C G T A C G T
C T A G C G T A A C G T G C T A C T G A A G T C C G T A C G A T G A T C A G T C A G C T G C T A A C T G G C A T C G T A T C A G

PB0014.1_Esrra_1/Jaspar

Match Rank:9
Score:0.63
Offset:-6
Orientation:forward strand
Alignment:------AGATCATAKT-
TATTCAAGGTCATGCGA
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G C T G A A C G T T G A C C G T A A C G T C G T A A C T G A C G T A C G T
C A G T G T C A A C G T A G C T T A G C C T G A C T G A C A T G C A T G C A G T A G T C C T G A G C A T T C A G A G T C A C T G G T C A

PB0040.1_Lef1_1/Jaspar

Match Rank:10
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---AGATCATAKT----
NANAGATCAAAGGGNNN
 A C G T A C G T A C G T C G T A A C T G C T G A A C G T T G A C C G T A A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C T G G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C A G G C T A G A C T G A C T