Information for 11-TGTCTTAAAATAC (Motif 19)

A C G T A C T G A C G T A G T C C G A T A C G T C T G A C T G A C G T A C T G A C A G T C T G A G T A C
Reverse Opposite:
A C T G G A C T G C T A A G C T A C G T A G C T A G C T C G T A G C T A A C T G G T C A A G T C C G T A
p-value:1e-8
log p-value:-1.959e+01
Information Content per bp:1.787
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif2.08%
Number of Background Sequences with motif31.0
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets44.1 +/- 26.4bp
Average Position of motif in Background52.5 +/- 23.7bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.29
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC10/MA0905.1/Jaspar

Match Rank:1
Score:0.76
Offset:1
Orientation:forward strand
Alignment:TGTCTTAAAATAC
-GTCGTAAAAT--
 A C G T A C T G A C G T A G T C C G A T A C G T C T G A C T G A C G T A C T G A C A G T C T G A G T A C
A C G T T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T A C G T A C G T

PH0076.1_Hoxd11/Jaspar

Match Rank:2
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---TGTCTTAAAATAC-
TAAGGTCGTAAAATCCT
 A C G T A C G T A C G T A C G T A C T G A C G T A G T C C G A T A C G T C T G A C T G A C G T A C T G A C A G T C T G A G T A C A C G T
G A C T G C T A C T G A T C A G T C A G A G C T G A T C C T A G A C G T C G T A C G T A G C T A G C T A G C A T G A T C G A T C C A G T

PH0066.1_Hoxc11/Jaspar

Match Rank:3
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---TGTCTTAAAATAC
TAAAGTCGTAAAATAG
 A C G T A C G T A C G T A C G T A C T G A C G T A G T C C G A T A C G T C T G A C T G A C G T A C T G A C A G T C T G A G T A C
G A C T C T G A C G T A C T G A T C A G A G C T G A T C C T A G A C G T C G T A C G T A C G T A G C T A G A C T C T G A C A T G

PH0065.1_Hoxc10/Jaspar

Match Rank:4
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---TGTCTTAAAATAC
TAAAGTCGTAAAACGT
 A C G T A C G T A C G T A C G T A C T G A C G T A G T C C G A T A C G T C T G A C T G A C G T A C T G A C A G T C T G A G T A C
G A C T C G T A C G T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C A T C G A C G T

HOXD11/MA0908.1/Jaspar

Match Rank:5
Score:0.74
Offset:1
Orientation:forward strand
Alignment:TGTCTTAAAATAC
-GTCGTAAAAA--
 A C G T A C T G A C G T A G T C C G A T A C G T C T G A C T G A C G T A C T G A C A G T C T G A G T A C
A C G T T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A A C G T A C G T

PH0047.1_Hoxa11/Jaspar

Match Rank:6
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---TGTCTTAAAATAC
TAAAGTCGTAAAACAT
 A C G T A C G T A C G T A C G T A C T G A C G T A G T C C G A T A C G T C T G A C T G A C G T A C T G A C A G T C T G A G T A C
G C A T C T G A G C T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C C T G A A C G T

HOXC11/MA0651.1/Jaspar

Match Rank:7
Score:0.72
Offset:0
Orientation:forward strand
Alignment:TGTCTTAAAATAC
GGTCGTAAAAT--
 A C G T A C T G A C G T A G T C C G A T A C G T C T G A C T G A C G T A C T G A C A G T C T G A G T A C
C T A G T C A G G A C T G A T C C T A G C G A T C G T A C G T A G T C A G C T A G C A T A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:8
Score:0.72
Offset:1
Orientation:forward strand
Alignment:TGTCTTAAAATAC
-GTCATAAAAN--
 A C G T A C T G A C G T A G T C C G A T A C G T C T G A C T G A C G T A C T G A C A G T C T G A G T A C
A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T A C G T

Hoxa11/MA0911.1/Jaspar

Match Rank:9
Score:0.71
Offset:0
Orientation:forward strand
Alignment:TGTCTTAAAATAC
GGTCGTAAAATT-
 A C G T A C T G A C G T A G T C C G A T A C G T C T G A C T G A C G T A C T G A C A G T C T G A G T A C
C T A G T C A G A G C T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C A T C G A T A C G T

PH0077.1_Hoxd12/Jaspar

Match Rank:10
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---TGTCTTAAAATAC-
CAAGGTCGTAAAATCTT
 A C G T A C G T A C G T A C G T A C T G A C G T A G T C C G A T A C G T C T G A C T G A C G T A C T G A C A G T C T G A G T A C A C G T
G A C T G C T A C T G A T A C G T C A G A G C T G T A C C T A G A C G T C G T A C G T A C G T A G C T A G A C T G A T C G C A T C A G T