Information for 2-CTAATTTGCA (Motif 13)

A G T C C G A T G C T A C G T A G C A T G A C T C A G T T C A G A G T C G C T A
Reverse Opposite:
C G A T T C A G A G T C G T C A C T G A C G T A G C A T C G A T G C T A T C A G
p-value:1e-9
log p-value:-2.252e+01
Information Content per bp:1.662
Number of Target Sequences with motif45.0
Percentage of Target Sequences with motif13.39%
Number of Background Sequences with motif2234.6
Percentage of Background Sequences with motif4.58%
Average Position of motif in Targets47.3 +/- 26.7bp
Average Position of motif in Background48.6 +/- 27.1bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POU1F1/MA0784.1/Jaspar

Match Rank:1
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:CTAATTTGCA----
CTAATTTGCATATT
 A G T C C G A T G C T A C G T A G C A T G A C T C A G T T C A G A G T C G C T A A C G T A C G T A C G T A C G T
G A T C G C A T T G C A G C T A C A G T G C A T C G A T T C A G G T A C C T G A G A C T G C T A G C A T G C A T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:CTAATTTGCA--
CTCATTTGCATW
 A G T C C G A T G C T A C G T A G C A T G A C T C A G T T C A G A G T C G C T A A C G T A C G T
A G T C G C A T T G A C G T C A A C G T A G C T C G A T T C A G T G A C G C T A G C A T C G T A

PH0144.1_Pou2f2/Jaspar

Match Rank:3
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-CTAATTTGCA-----
TNTAATTTGCATANNN
 A C G T A G T C C G A T G C T A C G T A G C A T G A C T C A G T T C A G A G T C G C T A A C G T A C G T A C G T A C G T A C G T
A C G T G A T C C A G T G T C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A C G A T C G T A G T A C C G T A T C G A

Pou2f3/MA0627.1/Jaspar

Match Rank:4
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-CTAATTTGCA-----
TNTAATTTGCATACNA
 A C G T A G T C C G A T G C T A C G T A G C A T G A C T C A G T T C A G A G T C G C T A A C G T A C G T A C G T A C G T A C G T
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

PH0145.1_Pou2f3/Jaspar

Match Rank:5
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-CTAATTTGCA-----
TNTAATTTGCATACNA
 A C G T A G T C C G A T G C T A C G T A G C A T G A C T C A G T T C A G A G T C G C T A A C G T A C G T A C G T A C G T A C G T
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

POU2F2/MA0507.1/Jaspar

Match Rank:6
Score:0.77
Offset:0
Orientation:forward strand
Alignment:CTAATTTGCA---
TTCATTTGCATAT
 A G T C C G A T G C T A C G T A G C A T G A C T C A G T T C A G A G T C G C T A A C G T A C G T A C G T
G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T

POU3F2/MA0787.1/Jaspar

Match Rank:7
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:CTAATTTGCA---
-TAATTTGCATAA
 A G T C C G A T G C T A C G T A G C A T G A C T C A G T T C A G A G T C G C T A A C G T A C G T A C G T
A C G T C G A T T G C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A A G C T C G T A G C T A

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:CTAATTTGCA--
BTVATTWGCATA
 A G T C C G A T G C T A C G T A G C A T G A C T C A G T T C A G A G T C G C T A A C G T A C G T
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A

PAX4/MA0068.2/Jaspar

Match Rank:9
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:CTAATTTGCA
CTAATTAG--
 A G T C C G A T G C T A C G T A G C A T G A C T C A G T T C A G A G T C G C T A
A G T C C A G T C G T A G T C A A C G T C G A T G T C A T C A G A C G T A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.73
Offset:3
Orientation:forward strand
Alignment:CTAATTTGCA---
---ATTTGCATAA
 A G T C C G A T G C T A C G T A G C A T G A C T C A G T T C A G A G T C G C T A A C G T A C G T A C G T
A C G T A C G T A C G T C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A