Information for 5-YRCTGGAGTA (Motif 12)

A G T C C T A G A G T C A C G T A C T G A C T G C T G A A C T G A C G T C G T A
Reverse Opposite:
A C G T C G T A A G T C A G C T A G T C A G T C C G T A A C T G A G T C C T A G
p-value:1e-4
log p-value:-1.130e+01
Information Content per bp:1.904
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif2.26%
Number of Background Sequences with motif16.4
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets32.6 +/- 22.9bp
Average Position of motif in Background55.1 +/- 23.8bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--YRCTGGAGTA
GRTGMTRGAGCC
 A C G T A C G T A G T C C T A G A G T C A C G T A C T G A C T G C T G A A C T G A C G T C G T A
A T C G T C G A G A C T A T C G T G A C A C G T C T A G A C T G C G T A A C T G A G T C G T A C

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:2
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:YRCTGGAGTA--
--CTYRAGTGSY
 A G T C C T A G A G T C A C G T A C T G A C T G C T G A A C T G A C G T C G T A A C G T A C G T
A C G T A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:YRCTGGAGTA---
---GGGAGGACNG
 A G T C C T A G A G T C A C G T A C T G A C T G C T G A A C T G A C G T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T C T A G A C T G A C T G C G T A A C T G A T C G C G T A A T G C A G C T T A C G

PB0185.1_Tcf1_2/Jaspar

Match Rank:4
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--YRCTGGAGTA--
TTGCCCGGATTAGG
 A C G T A C G T A G T C C T A G A G T C A C G T A C T G A C T G C T G A A C T G A C G T C G T A A C G T A C G T
C G A T A C G T T C A G G A T C T A G C A G T C T A C G A C T G C T G A C A G T A C G T C G T A C A T G C T A G

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:5
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:YRCTGGAGTA--
----GGATTAGC
 A G T C C T A G A G T C A C G T A C T G A C T G C T G A A C T G A C G T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C

Pitx1/MA0682.1/Jaspar

Match Rank:6
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:YRCTGGAGTA-
---GGGATTAA
 A G T C C T A G A G T C A C G T A C T G A C T G C T G A A C T G A C G T C G T A A C G T
A C G T A C G T A C G T C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A

PITX3/MA0714.1/Jaspar

Match Rank:7
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:YRCTGGAGTA--
---GGGATTANN
 A G T C C T A G A G T C A C G T A C T G A C T G C T G A A C T G A C G T C G T A A C G T A C G T
A C G T A C G T A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G

PB0091.1_Zbtb3_1/Jaspar

Match Rank:8
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----YRCTGGAGTA--
AATCGCACTGCATTCCG
 A C G T A C G T A C G T A C G T A C G T A G T C C T A G A G T C A C G T A C T G A C T G C T G A A C T G A C G T C G T A A C G T A C G T
C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:9
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:YRCTGGAGTA--
--VRGGATTARN
 A G T C C T A G A G T C A C G T A C T G A C T G C T G A A C T G A C G T C G T A A C G T A C G T
A C G T A C G T T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C

ZNF354C/MA0130.1/Jaspar

Match Rank:10
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:YRCTGGAGTA
--GTGGAT--
 A G T C C T A G A G T C A C G T A C T G A C T G C T G A A C T G A C G T C G T A
A C G T A C G T A T C G A C G T A C T G A C T G C G T A A C G T A C G T A C G T