Information for 6-CTGGACGGGTTCC (Motif 9)

A G T C A C G T A C T G A C T G C G T A A G T C A C T G A C T G A C T G A C G T A C G T A G T C A G T C
Reverse Opposite:
A C T G A C T G C G T A C G T A A G T C A G T C A G T C A C T G A C G T A G T C A G T C C G T A A C T G
p-value:1e-7
log p-value:-1.778e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif1.24%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets66.3 +/- 32.8bp
Average Position of motif in Background34.3 +/- 2.1bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CTGGACGGGTTCC-
CTGGCAGNCTGCCA
 A G T C A C G T A C T G A C T G C G T A A G T C A C T G A C T G A C T G A C G T A C G T A G T C A G T C A C G T
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:2
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CTGGACGGGTTCC-
CAKCTGKYCYYTTYCCC
 A C G T A C G T A C G T A G T C A C G T A C T G A C T G C G T A A G T C A C T G A C T G A C T G A C G T A C G T A G T C A G T C A C G T
T G A C G C T A A C G T T G A C C G A T A C T G A C T G A G T C A G T C A G T C A G C T A G C T A G C T A G C T G A T C T G A C G T A C

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CTGGACGGGTTCC---
TTGGCANNNTGCCAAG
 A G T C A C G T A C T G A C T G C G T A A G T C A C T G A C T G A C T G A C G T A C G T A G T C A G T C A C G T A C G T A C G T
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

PB0167.1_Sox13_2/Jaspar

Match Rank:4
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---CTGGACGGGTTCC-
GTATTGGGTGGGTAATT
 A C G T A C G T A C G T A G T C A C G T A C T G A C T G C G T A A G T C A C T G A C T G A C T G A C G T A C G T A G T C A G T C A C G T
C T A G C G A T C T G A G A C T A G C T C A T G C A T G C T A G G C A T A C T G C A T G C A T G C G A T G C T A G C A T G C A T C A G T

TFCP2/MA0145.3/Jaspar

Match Rank:5
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:CTGGACGGGTTCC
--AAACCGGTTT-
 A G T C A C G T A C T G A C T G C G T A A G T C A C T G A C T G A C T G A C G T A C G T A G T C A G T C
A C G T A C G T C T G A C T G A C G T A A T G C G A T C C T A G A T C G G C A T G C A T A G C T A C G T

POL011.1_XCPE1/Jaspar

Match Rank:6
Score:0.50
Offset:2
Orientation:forward strand
Alignment:CTGGACGGGTTCC
--GGGCGGGACC-
 A G T C A C G T A C T G A C T G C G T A A G T C A C T G A C T G A C T G A C G T A C G T A G T C A G T C
A C G T A C G T A C T G A T C G A C T G A G T C A C T G A C T G C T A G C G T A A T G C G T A C A C G T

SPIB/MA0081.1/Jaspar

Match Rank:7
Score:0.50
Offset:9
Orientation:reverse strand
Alignment:CTGGACGGGTTCC---
---------TTCCTCT
 A G T C A C G T A C T G A C T G C G T A A G T C A C T G A C T G A C T G A C G T A C G T A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T C G A T G A T C A G T C A C G T A T G C C G A T

PB0162.1_Sfpi1_2/Jaspar

Match Rank:8
Score:0.50
Offset:7
Orientation:reverse strand
Alignment:CTGGACGGGTTCC--------
-------GGTTCCNNAATTTG
 A G T C A C G T A C T G A C T G C G T A A G T C A C T G A C T G A C T G A C G T A C G T A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G A C T G C G A T G C A T A G T C A G T C A C T G C A T G G C T A C G T A C G A T G A C T C A G T C A T G

PB0039.1_Klf7_1/Jaspar

Match Rank:9
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--CTGGACGGGTTCC-
NNAGGGGCGGGGTNNA
 A C G T A C G T A G T C A C G T A C T G A C T G C G T A A G T C A C T G A C T G A C T G A C G T A C G T A G T C A G T C A C G T
G C T A C G A T C T G A C T A G C T A G A C T G A C T G G A T C C A T G A C T G C A T G C A T G A G C T G A T C T C A G C G T A

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.48
Offset:2
Orientation:reverse strand
Alignment:CTGGACGGGTTCC
--GCTCGGSCTC-
 A G T C A C G T A C T G A C T G C G T A A G T C A C T G A C T G A C T G A C G T A C G T A G T C A G T C
A C G T A C G T C T A G G T A C A C G T A T G C C T A G A C T G T A C G A G T C A C G T A G T C A C G T