Information for 3-WCAGACCTGGATGGAG (Motif 6)

C G T A A G T C G C T A A C T G G T C A A G T C A G T C A C G T C A T G A C T G C G T A C G A T C T A G A C T G G C T A C T A G
Reverse Opposite:
G A T C C G A T A G T C A G T C G C T A C G A T A G T C G A T C C G T A T A C G C T A G C A G T G T A C C A G T C T A G G C A T
p-value:1e-9
log p-value:-2.173e+01
Information Content per bp:1.697
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif1.65%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.8 +/- 22.5bp
Average Position of motif in Background63.1 +/- 2.4bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:1
Score:0.59
Offset:5
Orientation:forward strand
Alignment:WCAGACCTGGATGGAG-
-----CGTGGGTGGTCC
 C G T A A G T C G C T A A C T G G T C A A G T C A G T C A C G T C A T G A C T G C G T A C G A T C T A G A C T G G C T A C T A G A C G T
A C G T A C G T A C G T A C G T A C G T A G T C A T C G G C A T C T A G A C T G T A C G C G A T T C A G C A T G A G C T T A G C G A T C

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-WCAGACCTGGATGGAG
GTCATGCHTGRCTGS--
 A C G T C G T A A G T C G C T A A C T G G T C A A G T C A G T C A C G T C A T G A C T G C G T A C G A T C T A G A C T G G C T A C T A G
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T A C G T

PB0167.1_Sox13_2/Jaspar

Match Rank:3
Score:0.53
Offset:3
Orientation:forward strand
Alignment:WCAGACCTGGATGGAG----
---GTATTGGGTGGGTAATT
 C G T A A G T C G C T A A C T G G T C A A G T C A G T C A C G T C A T G A C T G C G T A C G A T C T A G A C T G G C T A C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T A G C G A T C T G A G A C T A G C T C A T G C A T G C T A G G C A T A C T G C A T G C A T G C G A T G C T A G C A T G C A T C A G T

RORA/MA0071.1/Jaspar

Match Rank:4
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:WCAGACCTGGATGGAG
--TGACCTTGAT----
 C G T A A G T C G C T A A C T G G T C A A G T C A G T C A C G T C A T G A C T G C G T A C G A T C T A G A C T G G C T A C T A G
A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T A C G T A C G T A C G T A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--WCAGACCTGGATGGAG
NGTCACGCTTGGCTGC--
 A C G T A C G T C G T A A G T C G C T A A C T G G T C A A G T C A G T C A C G T C A T G A C T G C G T A C G A T C T A G A C T G G C T A C T A G
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C A C G T A C G T

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:6
Score:0.50
Offset:5
Orientation:forward strand
Alignment:WCAGACCTGGATGGAG-
-----RGKGGGCGGAGC
 C G T A A G T C G C T A A C T G G T C A A G T C A G T C A C G T C A T G A C T G C G T A C G A T C T A G A C T G G C T A C T A G A C G T
A C G T A C G T A C G T A C G T A C G T C T G A T C A G C A G T C T A G A C T G C T A G G A T C A T C G A C T G C T G A T C A G G A T C

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:7
Score:0.50
Offset:2
Orientation:reverse strand
Alignment:WCAGACCTGGATGGAG
--TGACCTTGAN----
 C G T A A G T C G C T A A C T G G T C A A G T C A G T C A C G T C A T G A C T G C G T A C G A T C T A G A C T G G C T A C T A G
A C G T A C G T G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A A C G T A C G T A C G T A C G T

ZNF354C/MA0130.1/Jaspar

Match Rank:8
Score:0.50
Offset:10
Orientation:reverse strand
Alignment:WCAGACCTGGATGGAG
----------GTGGAT
 C G T A A G T C G C T A A C T G G T C A A G T C A G T C A C G T C A T G A C T G C G T A C G A T C T A G A C T G G C T A C T A G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G A C G T A C T G A C T G C G T A A C G T

KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer

Match Rank:9
Score:0.50
Offset:4
Orientation:reverse strand
Alignment:WCAGACCTGGATGGAG---
----NNVDGGGYGGGGCYN
 C G T A A G T C G C T A A C T G G T C A A G T C A G T C A C G T C A T G A C T G C G T A C G A T C T A G A C T G G C T A C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A C G T G A C T C A G C T G A A C T G A C T G A C T G A G C T A C T G A C T G C T A G A C T G A G T C A G T C C T G A

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:10
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:WCAGACCTGGATGGAG
--TGACCTTGAV----
 C G T A A G T C G C T A A C T G G T C A A G T C A G T C A C G T C A T G A C T G C G T A C G A T C T A G A C T G G C T A C T A G
A C G T A C G T G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A A C G T A C G T A C G T A C G T