Information for 3-AAAAATGAATTCA (Motif 4)

C G T A C G T A C G T A C G T A C G T A C G A T A T C G C G T A C G T A A C G T A C G T G T A C C G T A
Reverse Opposite:
A C G T A C T G C G T A C G T A A C G T A C G T A T G C C G T A C G A T A C G T A C G T A C G T A C G T
p-value:1e-10
log p-value:-2.341e+01
Information Content per bp:1.913
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif2.07%
Number of Background Sequences with motif5.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets56.8 +/- 20.4bp
Average Position of motif in Background78.7 +/- 14.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0006.1_Barhl2/Jaspar

Match Rank:1
Score:0.71
Offset:0
Orientation:forward strand
Alignment:AAAAATGAATTCA---
AAAAACCAATTAAGAA
 C G T A C G T A C G T A C G T A C G T A C G A T A T C G C G T A C G T A A C G T A C G T G T A C C G T A A C G T A C G T A C G T
G T C A G T C A G T C A C T G A T C G A G A T C A G T C C T G A G C T A A C G T A C G T C G T A C T G A A T C G G C T A G C T A

PB0068.1_Sox1_1/Jaspar

Match Rank:2
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-AAAAATGAATTCA--
NNNTATTGAATTGNNN
 A C G T C G T A C G T A C G T A C G T A C G T A C G A T A T C G C G T A C G T A A C G T A C G T G T A C C G T A A C G T A C G T
T G C A G C T A C A G T G C A T C G T A C G A T C G A T A T C G G C T A C G T A C G A T C G A T C T A G G T C A G C A T C G A T

ONECUT3/MA0757.1/Jaspar

Match Rank:3
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-AAAAATGAATTCA
AAAAAATCAATAAT
 A C G T C G T A C G T A C G T A C G T A C G T A C G A T A T C G C G T A C G T A A C G T A C G T G T A C C G T A
T C G A C T G A C G T A G C T A C T G A C T G A G A C T G T A C T C G A C G T A C G A T C G T A G C T A G C A T

PH0108.1_Msx3/Jaspar

Match Rank:4
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AAAAATGAATTCA---
CAAAACCAATTAATTT
 C G T A C G T A C G T A C G T A C G T A C G A T A T C G C G T A C G T A A C G T A C G T G T A C C G T A A C G T A C G T A C G T
T G A C T C G A G T C A C T G A T C G A A T G C A G T C C T G A G T C A C G A T G A C T C G T A C T G A A C G T G A C T G C A T

PB0171.1_Sox18_2/Jaspar

Match Rank:5
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:AAAAATGAATTCA----
-NNNNTGAATTCANNNC
 C G T A C G T A C G T A C G T A C G T A C G A T A T C G C G T A C G T A A C G T A C G T G T A C C G T A A C G T A C G T A C G T A C G T
A C G T A C T G C A T G G A T C G C T A A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A T A C G A G C T T G A C G A T C

PH0005.1_Barhl1/Jaspar

Match Rank:6
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AAAAATGAATTCA---
AACAACCAATTAATTC
 C G T A C G T A C G T A C G T A C G T A C G A T A T C G C G T A C G T A A C G T A C G T G T A C C G T A A C G T A C G T A C G T
G T C A C T G A G T A C T C G A C T G A A T G C G A T C C T G A G C T A A C G T G A C T C G T A C T G A A C G T C G A T G A T C

PB0066.1_Sox17_1/Jaspar

Match Rank:7
Score:0.65
Offset:1
Orientation:forward strand
Alignment:AAAAATGAATTCA---
-ATAAACAATTAAACA
 C G T A C G T A C G T A C G T A C G T A C G A T A T C G C G T A C G T A A C G T A C G T G T A C C G T A A C G T A C G T A C G T
A C G T T G C A C G A T C T G A C G T A C G T A A G T C C G T A C G T A C G A T C G A T T C G A G C T A G C A T G A T C C G T A

PH0088.1_Isl2/Jaspar

Match Rank:8
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AAAAATGAATTCA---
CAAAATCAATTAATTT
 C G T A C G T A C G T A C G T A C G T A C G A T A T C G C G T A C G T A A C G T A C G T G T A C C G T A A C G T A C G T A C G T
G T A C G C T A G T C A G T C A G T C A A G C T G A T C G T C A G T C A G A C T G A C T C G T A C T G A C A G T C G A T G A C T

Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:9
Score:0.63
Offset:2
Orientation:forward strand
Alignment:AAAAATGAATTCA
--TAATCAATTA-
 C G T A C G T A C G T A C G T A C G T A C G A T A T C G C G T A C G T A A C G T A C G T G T A C C G T A
A C G T A C G T C G A T C T G A C G T A A G C T A G T C T G C A C T G A A C G T A G C T G C T A A C G T

Lhx3/MA0135.1/Jaspar

Match Rank:10
Score:0.62
Offset:2
Orientation:forward strand
Alignment:AAAAATGAATTCA--
--AAATTAATTAATC
 C G T A C G T A C G T A C G T A C G T A C G A T A T C G C G T A C G T A A C G T A C G T G T A C C G T A A C G T A C G T
A C G T A C G T C G T A T C G A C G T A A C G T A C G T C G T A C G T A G A C T A G C T G C T A C G T A G A C T A G T C