Information for 2-AACTATAAAGCAT (Motif 2)

C T G A G C T A G T A C A C G T C G T A A C G T C G T A C G T A C G T A A C T G A T G C C G T A A C G T
Reverse Opposite:
C G T A A C G T A T C G A G T C A C G T A C G T A C G T C G T A A C G T C G T A A C T G C A G T A G C T
p-value:1e-11
log p-value:-2.596e+01
Information Content per bp:1.937
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif2.07%
Number of Background Sequences with motif3.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets50.4 +/- 23.6bp
Average Position of motif in Background45.3 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AACTATAAAGCAT
NGYCATAAAWCH-
 C T G A G C T A G T A C A C G T C G T A A C G T C G T A C G T A C G T A A C T G A T G C C G T A A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T

Hoxc9/MA0485.1/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AACTATAAAGCAT
GGCCATAAATCAC
 C T G A G C T A G T A C A C G T C G T A A C G T C G T A C G T A C G T A A C T G A T G C C G T A A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AACTATAAAGCAT
GGCCATAAATCA-
 C T G A G C T A G T A C A C G T C G T A A C G T C G T A C G T A C G T A A C T G A T G C C G T A A C G T
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AACTATAAAGCAT
GGCCATAAATCA-
 C T G A G C T A G T A C A C G T C G T A A C G T C G T A C G T A C G T A A C T G A T G C C G T A A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:5
Score:0.61
Offset:1
Orientation:forward strand
Alignment:AACTATAAAGCAT
-GCCATAAATCA-
 C T G A G C T A G T A C A C G T C G T A A C G T C G T A C G T A C G T A A C T G A T G C C G T A A C G T
A C G T T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T

CDX2/MA0465.1/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AACTATAAAGCAT
AAGCCATAAAA---
 A C G T C T G A G C T A G T A C A C G T C G T A A C G T C G T A C G T A C G T A A C T G A T G C C G T A A C G T
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:forward strand
Alignment:AACTATAAAGCAT
-GCAATAAAA---
 C T G A G C T A G T A C A C G T C G T A A C G T C G T A C G T A C G T A A C T G A T G C C G T A A C G T
A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T A C G T

Foxq1/MA0040.1/Jaspar

Match Rank:8
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:AACTATAAAGCAT-
---AATAAACAATN
 C T G A G C T A G T A C A C G T C G T A A C G T C G T A C G T A C G T A A C T G A T G C C G T A A C G T A C G T
A C G T A C G T A C G T G C T A T G C A A G C T C G T A C G T A C G T A A G T C C G T A C G T A A G C T C G T A

POL012.1_TATA-Box/Jaspar

Match Rank:9
Score:0.56
Offset:2
Orientation:forward strand
Alignment:AACTATAAAGCAT----
--GTATAAAAGGCGGGG
 C T G A G C T A G T A C A C G T C G T A A C G T C G T A C G T A C G T A A C T G A T G C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:10
Score:0.56
Offset:2
Orientation:forward strand
Alignment:AACTATAAAGCAT----
--GTATAAAAGGCGGGG
 C T G A G C T A G T A C A C G T C G T A A C G T C G T A C G T A C G T A A C T G A T G C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G