Information for 4-GTSYMTAGAGGKMMCT (Motif 7)

A C T G A C G T A T G C A G T C T G A C C G A T C T G A A C T G C G T A A C T G A C T G A C T G G T A C G T A C A G T C A C G T
Reverse Opposite:
C G T A A C T G A C T G A C T G G T A C A G T C A G T C A C G T A G T C A G C T C G T A A C T G C T A G A T C G C G T A A G T C
p-value:1e-13
log p-value:-3.044e+01
Information Content per bp:1.844
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets43.3 +/- 19.2bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer

Match Rank:1
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GTSYMTAGAGGKMMCT
GGGTTACTANAGGTCA--
 A C G T A C G T A C T G A C G T A T G C A G T C T G A C C G A T C T G A A C T G C G T A A C T G A C T G A C T G G T A C G T A C A G T C A C G T
C T A G C A T G C A T G A G C T G A C T C G T A G A T C A G C T G T C A A T G C T C G A C T A G C A T G A C G T A G T C C T G A A C G T A C G T

SMAD3/MA0795.1/Jaspar

Match Rank:2
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GTSYMTAGAGGKMMCT
-TGTCTAGACG-----
 A C T G A C G T A T G C A G T C T G A C C G A T C T G A A C T G C G T A A C T G A C T G A C T G G T A C G T A C A G T C A C G T
A C G T C G A T C A T G C A G T T A G C A C G T T C G A A T C G G C T A G A T C C T A G A C G T A C G T A C G T A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--GTSYMTAGAGGKMMCT--
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C T G A C G T A T G C A G T C T G A C C G A T C T G A A C T G C G T A A C T G A C T G A C T G G T A C G T A C A G T C A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

PB0128.1_Gcm1_2/Jaspar

Match Rank:4
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-GTSYMTAGAGGKMMCT
TGCGCATAGGGGAGGAG
 A C G T A C T G A C G T A T G C A G T C T G A C C G A T C T G A A C T G C G T A A C T G A C T G A C T G G T A C G T A C A G T C A C G T
C G A T C A T G A T G C T A C G G T A C T C G A A G C T T C G A C A T G A C T G A C T G A C T G T C G A A T C G T C A G G T C A A C T G

Rarg(var.2)/MA0860.1/Jaspar

Match Rank:5
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---GTSYMTAGAGGKMMCT
AAGGTCACGAAAGGTCA--
 A C G T A C G T A C G T A C T G A C G T A T G C A G T C T G A C C G A T C T G A A C T G C G T A A C T G A C T G A C T G G T A C G T A C A G T C A C G T
C T G A T C G A A T C G A C T G A C G T G T A C T C G A G T A C A T C G T C G A T C G A T C G A A C T G A C T G G C A T G A T C T C G A A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:6
Score:0.51
Offset:6
Orientation:forward strand
Alignment:GTSYMTAGAGGKMMCT
------AGRGGTCA--
 A C T G A C G T A T G C A G T C T G A C C G A T C T G A A C T G C G T A A C T G A C T G A C T G G T A C G T A C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T

CTCF/MA0139.1/Jaspar

Match Rank:7
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--GTSYMTAGAGGKMMCT-
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C T G A C G T A T G C A G T C T G A C C G A T C T G A A C T G C G T A A C T G A C T G A C T G G T A C G T A C A G T C A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

Bcl6/MA0463.1/Jaspar

Match Rank:8
Score:0.51
Offset:0
Orientation:forward strand
Alignment:GTSYMTAGAGGKMMCT
TTTCCTAGAAAGCA--
 A C T G A C G T A T G C A G T C T G A C C G A T C T G A A C T G C G T A A C T G A C T G A C T G G T A C G T A C A G T C A C G T
C A G T C G A T A G C T G T A C A G T C A C G T T C G A C T A G C T G A T C G A C T G A C A T G G T A C G C T A A C G T A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:GTSYMTAGAGGKMMCT----
GCCASCAGGGGGCGCYVNNG
 A C T G A C G T A T G C A G T C T G A C C G A T C T G A A C T G C G T A A C T G A C T G A C T G G T A C G T A C A G T C A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:10
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-GTSYMTAGAGGKMMCT
GGTCANYTGAGGWCA--
 A C G T A C T G A C G T A T G C A G T C T G A C C G A T C T G A A C T G C G T A A C T G A C T G A C T G G T A C G T A C A G T C A C G T
C T A G C A T G A C G T A G T C G C T A A G C T A G T C A G C T T C A G C T G A A C T G C A T G G C A T A T G C C G T A A C G T A C G T