Information for 10-AGGCACTCTG (Motif 11)

C G T A A C T G T A C G A G T C T C G A A T G C A C G T G T A C A C G T A T C G
Reverse Opposite:
A T G C C G T A A C T G G T C A A T C G A G C T C T A G A T G C T G A C G C A T
p-value:1e-10
log p-value:-2.474e+01
Information Content per bp:1.802
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif2.67%
Number of Background Sequences with motif221.5
Percentage of Background Sequences with motif0.46%
Average Position of motif in Targets54.6 +/- 27.6bp
Average Position of motif in Background54.4 +/- 31.9bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:1
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:AGGCACTCTG
MRSCACTYAA
 C G T A A C T G T A C G A G T C T C G A A T G C A C G T G T A C A C G T A T C G
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AGGCACTCTG-
AGCCACTCAAG
 C G T A A C T G T A C G A G T C T C G A A T G C A C G T G T A C A C G T A T C G A C G T
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AGGCACTCTG
AAGCACTTAA
 C G T A A C T G T A C G A G T C T C G A A T G C A C G T G T A C A C G T A T C G
T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AGGCACTCTG
AASCACTCAA
 C G T A A C T G T A C G A G T C T C G A A T G C A C G T G T A C A C G T A T C G
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:5
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:AGGCACTCTG-
-NSCACTYVAV
 C G T A A C T G T A C G A G T C T C G A A T G C A C G T G T A C A C G T A T C G A C G T
A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:6
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:AGGCACTCTG-------
-TGGACTTTGNNCTNTG
 C G T A A C T G T A C G A G T C T C G A A T G C A C G T G T A C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C G A C T A G T C C G A T C A T G

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:7
Score:0.56
Offset:1
Orientation:forward strand
Alignment:AGGCACTCTG-
-RSCACTYRAG
 C G T A A C T G T A C G A G T C T C G A A T G C A C G T G T A C A C G T A T C G A C G T
A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G

HNF4G/MA0484.1/Jaspar

Match Rank:8
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:AGGCACTCTG------
-TGGACTTTGNNCTCN
 C G T A A C T G T A C G A G T C T C G A A T G C A C G T G T A C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T T C A G T C A G G T C A G A T C G A C T A G T C G C A T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.55
Offset:1
Orientation:forward strand
Alignment:AGGCACTCTG-
-VBSYGTCTGG
 C G T A A C T G T A C G A G T C T C G A A T G C A C G T G T A C A C G T A T C G A C G T
A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:10
Score:0.53
Offset:3
Orientation:forward strand
Alignment:AGGCACTCTG---
---CCTGCTGAGH
 C G T A A C T G T A C G A G T C T C G A A T G C A C G T G T A C A C G T A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A