Information for 7-CAAVTATTGATTT (Motif 3)

A G T C C T G A G T C A T C G A C A G T G T C A A C G T A C G T A C T G C G T A A G C T C G A T A C G T
Reverse Opposite:
C G T A C G T A C T G A A C G T A G T C C G T A C G T A A C G T G T C A A C G T A C G T A G C T C T A G
p-value:1e-20
log p-value:-4.754e+01
Information Content per bp:1.854
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.54%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets52.0 +/- 21.6bp
Average Position of motif in Background38.0 +/- 27.1bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ONECUT3/MA0757.1/Jaspar

Match Rank:1
Score:0.81
Offset:2
Orientation:reverse strand
Alignment:CAAVTATTGATTT---
--NTTATTGATTTTTT
 A G T C C T G A G T C A T C G A C A G T G T C A A C G T A C G T A C T G C G T A A G C T C G A T A C G T A C G T A C G T A C G T
A C G T A C G T C G T A C G A T G C A T G C T A G C A T A G C T C A T G C T G A G A C T G A C T C G A T G C A T G A C T A G C T

ONECUT1/MA0679.1/Jaspar

Match Rank:2
Score:0.81
Offset:2
Orientation:reverse strand
Alignment:CAAVTATTGATTT---
--ANTATCGATTTTTN
 A G T C C T G A G T C A T C G A C A G T G T C A A C G T A C G T A C T G C G T A A G C T C G A T A C G T A C G T A C G T A C G T
A C G T A C G T C T G A C G A T G C A T C T G A C G A T G A T C C T A G T G C A A G C T G A C T C G A T G C A T G A C T A C G T

ONECUT2/MA0756.1/Jaspar

Match Rank:3
Score:0.79
Offset:2
Orientation:reverse strand
Alignment:CAAVTATTGATTT---
--ATTATCGATTTTTT
 A G T C C T G A G T C A T C G A C A G T G T C A A C G T A C G T A C T G C G T A A G C T C G A T A C G T A C G T A C G T A C G T
A C G T A C G T C G T A C G A T G C A T C G T A C G A T A G T C C A T G G T C A G A C T G A C T C G A T G C A T G A C T A G C T

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:4
Score:0.76
Offset:5
Orientation:reverse strand
Alignment:CAAVTATTGATTT--
-----ATTGATTYND
 A G T C C T G A G T C A T C G A C A G T G T C A A C G T A C G T A C T G C G T A A G C T C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A A C G T A G C T A T C G G T C A A G C T G A C T A G C T T G A C C G A T

PB0068.1_Sox1_1/Jaspar

Match Rank:5
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:CAAVTATTGATTT----
-NNNTATTGAATTGNNN
 A G T C C T G A G T C A T C G A C A G T G T C A A C G T A C G T A C T G C G T A A G C T C G A T A C G T A C G T A C G T A C G T A C G T
A C G T T G C A G C T A C A G T G C A T C G T A C G A T C G A T A T C G G C T A C G T A C G A T C G A T C T A G G T C A G C A T C G A T

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:6
Score:0.69
Offset:3
Orientation:forward strand
Alignment:CAAVTATTGATTT
---NTATYGATCH
 A G T C C T G A G T C A T C G A C A G T G T C A A C G T A C G T A C T G C G T A A G C T C G A T A C G T
A C G T A C G T A C G T C T A G C A G T C G T A A C G T A G T C A C T G C G T A A G C T A G T C G A T C

Nr2e1/MA0676.1/Jaspar

Match Rank:7
Score:0.69
Offset:6
Orientation:reverse strand
Alignment:CAAVTATTGATTT--
------TTGACTTTT
 A G T C C T G A G T C A T C G A C A G T G T C A A C G T A C G T A C T G C G T A A G C T C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C G T T C A G C T G A G A T C G A C T G A C T G A C T C G A T

Foxd3/MA0041.1/Jaspar

Match Rank:8
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CAAVTATTGATTT
-GAATGTTTGTTT
 A G T C C T G A G T C A T C G A C A G T G T C A A C G T A C G T A C T G C G T A A G C T C G A T A C G T
A C G T C T A G G C T A G C T A G A C T C T A G A C G T C G A T C A G T C T A G G A C T A C G T A G C T

CUX1/MA0754.1/Jaspar

Match Rank:9
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:CAAVTATTGATTT
---NTATCGATTA
 A G T C C T G A G T C A T C G A C A G T G T C A A C G T A C G T A C T G C G T A A G C T C G A T A C G T
A C G T A C G T A C G T C A G T A C G T C G T A G C A T A G T C T C A G T C G A G A C T G A C T C T G A

FOXC1/MA0032.2/Jaspar

Match Rank:10
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:CAAVTATTGATTT-
---ATATTTACATA
 A G T C C T G A G T C A T C G A C A G T G T C A A C G T A C G T A C T G C G T A A G C T C G A T A C G T A C G T
A C G T A C G T A C G T C G T A G A C T T C G A G A C T C A G T C A G T C G T A A G T C G C T A G A C T C G T A