Information for 6-MARATAKGGYTWARAW (Motif 6)

G T C A C G T A C T G A C G T A A G C T C G T A C A T G C T A G A C T G A G C T A C G T C G A T C T G A C T G A C G T A C G T A
Reverse Opposite:
C G A T A C G T A G C T A G C T C G T A C G T A C T G A G T A C A G T C G T A C A C G T C T G A A C G T A G C T A C G T A C G T
p-value:1e-15
log p-value:-3.676e+01
Information Content per bp:1.796
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.10%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets34.4 +/- 21.0bp
Average Position of motif in Background61.7 +/- 16.1bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0125.1_Obox5_2/Jaspar

Match Rank:1
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:MARATAKGGYTWARAW---
--NANAGGGATTAATTATN
 G T C A C G T A C T G A C G T A A G C T C G T A C A T G C T A G A C T G A G C T A C G T C G A T C T G A C T G A C G T A C G T A A C G T A C G T A C G T
A C G T A C G T T C G A C T G A T C A G T C G A T C A G T C A G A C T G G C T A A C G T C G A T C G T A C G T A G C A T G A C T T C G A G C A T T G A C

PH0137.1_Pitx1/Jaspar

Match Rank:2
Score:0.55
Offset:1
Orientation:forward strand
Alignment:MARATAKGGYTWARAW--
-TTAGAGGGATTAACAAT
 G T C A C G T A C T G A C G T A A G C T C G T A C A T G C T A G A C T G A G C T A C G T C G A T C T G A C T G A C G T A C G T A A C G T A C G T
A C G T G A C T A C G T T C G A C T A G C T G A T C A G C T A G C A T G G T C A A C G T G A C T C G T A C T G A G T A C C T G A G T C A G C A T

Twist2/MA0633.1/Jaspar

Match Rank:3
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:MARATAKGGYTWARAW
NACATATGGN------
 G T C A C G T A C T G A C G T A A G C T C G T A C A T G C T A G A C T G A G C T A C G T C G A T C T G A C T G A C G T A C G T A
G T C A G T C A A G T C C G T A A G C T C T G A A C G T A C T G A C T G A G C T A C G T A C G T A C G T A C G T A C G T A C G T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:4
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:MARATAKGGYTWARAW
-----NGGGATTA---
 G T C A C G T A C T G A C G T A A G C T C G T A C A T G C T A G A C T G A G C T A C G T C G A T C T G A C T G A C G T A C G T A
A C G T A C G T A C G T A C G T A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T A C G T A C G T

PH0124.1_Obox5_1/Jaspar

Match Rank:5
Score:0.53
Offset:2
Orientation:forward strand
Alignment:MARATAKGGYTWARAW---
--TAGAGGGATTAAATTTC
 G T C A C G T A C T G A C G T A A G C T C G T A C A T G C T A G A C T G A G C T A C G T C G A T C T G A C T G A C G T A C G T A A C G T A C G T A C G T
A C G T A C G T G C A T C T G A T C A G T C G A T C A G C T A G C A T G C G T A A C G T C G A T C G T A C G T A G C T A G A C T A G C T G C A T G T A C

RHOXF1/MA0719.1/Jaspar

Match Rank:6
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:MARATAKGGYTWARAW
------NGGATTAN--
 G T C A C G T A C T G A C G T A A G C T C G T A C A T G C T A G A C T G A G C T A C G T C G A T C T G A C T G A C G T A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T A C G T A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:7
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:MARATAKGGYTWARAW
------GGGATTAA--
 G T C A C G T A C T G A C G T A A G C T C G T A C A T G C T A G A C T G A G C T A C G T C G A T C T G A C T G A C G T A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A A C G T A C G T

BHLHE23/MA0817.1/Jaspar

Match Rank:8
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-MARATAKGGYTWARAW
AAACATATGTTT-----
 A C G T G T C A C G T A C T G A C G T A A G C T C G T A C A T G C T A G A C T G A G C T A C G T C G A T C T G A C T G A C G T A C G T A
C G T A T C G A T G C A G T A C C T G A A G C T T G C A G A C T A C T G A C G T G A C T C G A T A C G T A C G T A C G T A C G T A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:9
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:MARATAKGGYTWARAW
-----VRGGATTARN-
 G T C A C G T A C T G A C G T A A G C T C G T A C A T G C T A G A C T G A G C T A C G T C G A T C T G A C T G A C G T A C G T A
A C G T A C G T A C G T A C G T A C G T T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C A C G T

PITX3/MA0714.1/Jaspar

Match Rank:10
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:MARATAKGGYTWARAW
------GGGATTANN-
 G T C A C G T A C T G A C G T A A G C T C G T A C A T G C T A G A C T G A G C T A C G T C G A T C T G A C T G A C G T A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G A C G T