Information for 5-HTGTTAAATGCTT (Motif 3)

G T A C C G A T C T A G A C G T A C G T C G T A G T C A C G T A A C G T C T A G G T A C A C G T A C G T
Reverse Opposite:
C G T A C G T A A C T G A G T C G T C A A C G T A C G T A C G T C G T A G T C A G A T C C G T A C A T G
p-value:1e-18
log p-value:-4.172e+01
Information Content per bp:1.809
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.22%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets65.2 +/- 21.0bp
Average Position of motif in Background60.0 +/- 35.7bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0006.1_Barhl2/Jaspar

Match Rank:1
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:HTGTTAAATGCTT---
NNNTTAATTGGTTTTT
 G T A C C G A T C T A G A C G T A C G T C G T A G T C A C G T A A C G T C T A G G T A C A C G T A C G T A C G T A C G T A C G T
C G A T C G A T T A G C G A C T C G A T C G T A C G T A C G A T G A C T C T A G C T A G A G C T G A C T C A G T C A G T C A G T

Hmx2/MA0897.1/Jaspar

Match Rank:2
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--HTGTTAAATGCTT--
ATTCNTTAATTGCTTGT
 A C G T A C G T G T A C C G A T C T A G A C G T A C G T C G T A G T C A C G T A A C G T C T A G G T A C A C G T A C G T A C G T A C G T
G C T A G A C T A C G T A G T C C G A T G C A T G C A T C T G A C G T A A C G T A G C T C A T G A G T C A G C T A C G T A T C G A G C T

PH0042.1_Hmx2/Jaspar

Match Rank:3
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--HTGTTAAATGCTT--
ATTCNTTAATTGCTTGT
 A C G T A C G T G T A C C G A T C T A G A C G T A C G T C G T A G T C A C G T A A C G T C T A G G T A C A C G T A C G T A C G T A C G T
G C T A G A C T A C G T A G T C C G A T G C A T G C A T C T G A C G T A A C G T A G C T C A T G A G T C A G C T A C G T A T C G A G C T

Hmx3/MA0898.1/Jaspar

Match Rank:4
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--HTGTTAAATGCTT--
ATTNNTTAATTGCTTGT
 A C G T A C G T G T A C C G A T C T A G A C G T A C G T C G T A G T C A C G T A A C G T C T A G G T A C A C G T A C G T A C G T A C G T
G C T A G C A T A G C T A G T C C G A T G C A T G C A T C T G A C G T A C A G T G A C T C T A G G A T C A G C T A C G T T A C G A C G T

PH0043.1_Hmx3/Jaspar

Match Rank:5
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--HTGTTAAATGCTT--
ATTNNTTAATTGCTTGT
 A C G T A C G T G T A C C G A T C T A G A C G T A C G T C G T A G T C A C G T A A C G T C T A G G T A C A C G T A C G T A C G T A C G T
G C T A G C A T A G C T A G T C C G A T G C A T G C A T C T G A C G T A C A G T G A C T C T A G G A T C A G C T A C G T T A C G A C G T

Hmx1/MA0896.1/Jaspar

Match Rank:6
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--HTGTTAAATGCTT--
ANNCATTAATTGCTNGN
 A C G T A C G T G T A C C G A T C T A G A C G T A C G T C G T A G T C A C G T A A C G T C T A G G T A C A C G T A C G T A C G T A C G T
T G C A G C A T A C G T A T G C G C T A G C A T G C A T C T G A C G T A C A G T G A C T C T A G A G T C G A C T A C G T A T C G A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:7
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--HTGTTAAATGCTT--
ANNCATTAATTGCTNGN
 A C G T A C G T G T A C C G A T C T A G A C G T A C G T C G T A G T C A C G T A A C G T C T A G G T A C A C G T A C G T A C G T A C G T
T G C A G C A T A C G T A T G C G C T A G C A T G C A T C T G A C G T A C A G T G A C T C T A G A G T C G A C T A C G T A T C G A C G T

BARHL2/MA0635.1/Jaspar

Match Rank:8
Score:0.67
Offset:2
Orientation:forward strand
Alignment:HTGTTAAATGCTT
--GCTAAACGGT-
 G T A C C G A T C T A G A C G T A C G T C G T A G T C A C G T A A C G T C T A G G T A C A C G T A C G T
A C G T A C G T T A C G G A T C C G A T C G T A C G T A C G T A G A T C C T A G T C A G G A C T A C G T

PH0005.1_Barhl1/Jaspar

Match Rank:9
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:HTGTTAAATGCTT---
GNNTTAATTGGTTGTT
 G T A C C G A T C T A G A C G T A C G T C G T A G T C A C G T A A C G T C T A G G T A C A C G T A C G T A C G T A C G T A C G T
C A T G G C T A T G C A G A C T C G A T C G T A C G T A C G A T A G C T C T A G T A C G G A C T A G C T C A T G G A C T C A G T

Barhl1/MA0877.1/Jaspar

Match Rank:10
Score:0.66
Offset:2
Orientation:forward strand
Alignment:HTGTTAAATGCTT
--GCTAATTGCT-
 G T A C C G A T C T A G A C G T A C G T C G T A G T C A C G T A A C G T C T A G G T A C A C G T A C G T
A C G T A C G T A T C G G A T C G C A T C G T A C T G A C G A T A G C T C T A G A T G C A G C T A C G T