Information for 7-CAGACTAAGGCTA (Motif 11)

G A T C C G T A A T C G C G T A A T G C G C A T T C G A G C T A T C A G C T A G G T A C G C A T C T G A
Reverse Opposite:
A G C T C G T A C A T G A G T C A G T C C G A T A G C T C G T A T A C G C G A T T A G C C G A T C A T G
p-value:1e-10
log p-value:-2.305e+01
Information Content per bp:1.684
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.51%
Number of Background Sequences with motif19.7
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets39.6 +/- 28.6bp
Average Position of motif in Background68.0 +/- 16.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0166.1_Sox12_2/Jaspar

Match Rank:1
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---CAGACTAAGGCTA
AAACAGACAAAGGAAT
 A C G T A C G T A C G T G A T C C G T A A T C G C G T A A T G C G C A T T C G A G C T A T C A G C T A G G T A C G C A T C T G A
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

Sox3/MA0514.1/Jaspar

Match Rank:2
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CAGACTAAGGCTA
AAAACAAAGG---
 G A T C C G T A A T C G C G T A A T G C G C A T T C G A G C T A T C A G C T A G G T A C G C A T C T G A
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:3
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CAGACTAAGGCTA
--AACAAAGG---
 G A T C C G T A A T C G C G T A A T G C G C A T T C G A G C T A T C A G C T A G G T A C G C A T C T G A
A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:4
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CAGACTAAGGCTA
--RACAAWGG---
 G A T C C G T A A T C G C G T A A T G C G C A T T C G A G C T A T C A G C T A G G T A C G C A T C T G A
A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CAGACTAAGGCTA
BCAGACWA------
 A C G T G A T C C G T A A T C G C G T A A T G C G C A T T C G A G C T A T C A G C T A G G T A C G C A T C T G A
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CAGACTAAGGCTA
AAAACAATGG---
 G A T C C G T A A T C G C G T A A T G C G C A T T C G A G C T A T C A G C T A G G T A C G C A T C T G A
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:7
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CAGACTAAGGCTA
VRRACAAWGG---
 G A T C C G T A A T C G C G T A A T G C G C A T T C G A G C T A T C A G C T A G G T A C G C A T C T G A
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T A C G T

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:8
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CAGACTAAGGCTA
-AGCCTCAGGCA-
 G A T C C G T A A T C G C G T A A T G C G C A T T C G A G C T A T C A G C T A G G T A C G C A T C T G A
A C G T G T C A T A C G A T G C A G T C A G C T T A G C T C G A T C A G A T C G T A G C C G T A A C G T

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:9
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CAGACTAAGGCTA
-AGCCTCAGGCA-
 G A T C C G T A A T C G C G T A A T G C G C A T T C G A G C T A T C A G C T A G G T A C G C A T C T G A
A C G T G T C A T A C G A T G C A G T C A G C T T A G C T G C A T C A G T A C G T A G C C G T A A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:10
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CAGACTAAGGCTA
-RAACAATGGN--
 G A T C C G T A A T C G C G T A A T G C G C A T T C G A G C T A T C A G C T A G G T A C G C A T C T G A
A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T A C G T