Information for 4-TTTTATKGGS (Motif 2)

G C A T A C G T G C A T G C A T T C G A G C A T C A G T A C T G T C A G A T C G
Reverse Opposite:
T A G C A G T C G T A C G T C A C G T A A G C T C G T A C G T A C G T A C G T A
p-value:1e-22
log p-value:-5.079e+01
Information Content per bp:1.656
Number of Target Sequences with motif89.0
Percentage of Target Sequences with motif10.39%
Number of Background Sequences with motif1446.6
Percentage of Background Sequences with motif3.08%
Average Position of motif in Targets52.8 +/- 26.4bp
Average Position of motif in Background49.1 +/- 28.9bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXB13/MA0901.1/Jaspar

Match Rank:1
Score:0.96
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATKGGS
NTTTTATTGG-
 A C G T G C A T A C G T G C A T G C A T T C G A G C A T C A G T A C T G T C A G A T C G
C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:2
Score:0.94
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATKGGS
TTTTTATTGG-
 A C G T G C A T A C G T G C A T G C A T T C G A G C A T C A G T A C T G T C A G A T C G
C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:3
Score:0.93
Offset:0
Orientation:forward strand
Alignment:TTTTATKGGS
TTTTATKRGG
 G C A T A C G T G C A T G C A T T C G A G C A T C A G T A C T G T C A G A T C G
C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G

HOXD13/MA0909.1/Jaspar

Match Rank:4
Score:0.93
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATKGGS
NTTTTATTGG-
 A C G T G C A T A C G T G C A T G C A T T C G A G C A T C A G T A C T G T C A G A T C G
C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.92
Offset:0
Orientation:reverse strand
Alignment:TTTTATKGGS
TTTTATTRGN
 G C A T A C G T G C A T G C A T T C G A G C A T C A G T A C T G T C A G A T C G
C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A

PH0057.1_Hoxb13/Jaspar

Match Rank:6
Score:0.91
Offset:-4
Orientation:reverse strand
Alignment:----TTTTATKGGS--
NNAATTTTATTGGNTN
 A C G T A C G T A C G T A C G T G C A T A C G T G C A T G C A T T C G A G C A T C A G T A C T G T C A G A T C G A C G T A C G T
A T G C C T A G C G T A C G T A A C G T C G A T C G A T G C A T C T G A G A C T C A G T C T A G T A C G C A T G G A C T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:7
Score:0.91
Offset:-4
Orientation:reverse strand
Alignment:----TTTTATKGGS--
NNANTTTTATTGGNNN
 A C G T A C G T A C G T A C G T G C A T A C G T G C A T G C A T T C G A G C A T C A G T A C T G T C A G A T C G A C G T A C G T
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:8
Score:0.90
Offset:0
Orientation:reverse strand
Alignment:TTTTATKGGS
TTTAATTGCN
 G C A T A C G T G C A T G C A T T C G A G C A T C A G T A C T G T C A G A T C G
C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C

CDX1/MA0878.1/Jaspar

Match Rank:9
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:TTTTATKGGS
TTTTATTGC-
 G C A T A C G T G C A T G C A T T C G A G C A T C A G T A C T G T C A G A T C G
C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:10
Score:0.85
Offset:-2
Orientation:reverse strand
Alignment:--TTTTATKGGS
DGWTTTATGRCN
 A C G T A C G T G C A T A C G T G C A T G C A T T C G A G C A T C A G T A C T G T C A G A T C G
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C