Information for 2-GAAGGTGCGA (Motif 6)

T A C G C G T A G T C A A C T G A T C G C G A T A T C G T G A C A C T G T G C A
Reverse Opposite:
A C G T A G T C A C T G A T G C C G T A A T G C A G T C A C G T A C G T A G T C
p-value:1e-10
log p-value:-2.437e+01
Information Content per bp:1.855
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.32%
Number of Background Sequences with motif156.5
Percentage of Background Sequences with motif0.33%
Average Position of motif in Targets45.3 +/- 24.8bp
Average Position of motif in Background48.2 +/- 30.8bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TBX21/MA0690.1/Jaspar

Match Rank:1
Score:0.78
Offset:1
Orientation:forward strand
Alignment:GAAGGTGCGA-
-AAGGTGTGAA
 T A C G C G T A G T C A A C T G A T C G C G A T A T C G T G A C A C T G T G C A A C G T
A C G T C T G A C T G A C T A G A C T G A G C T C A T G G A C T A C T G C T G A G C T A

EOMES/MA0800.1/Jaspar

Match Rank:2
Score:0.77
Offset:1
Orientation:forward strand
Alignment:GAAGGTGCGA----
-AAGGTGTGAAAAT
 T A C G C G T A G T C A A C T G A T C G C G A T A T C G T G A C A C T G T G C A A C G T A C G T A C G T A C G T
A C G T C T G A C T G A C T A G A C T G A G C T T C A G G A C T A C T G T C G A G C T A G T C A C G T A G A C T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:3
Score:0.76
Offset:1
Orientation:forward strand
Alignment:GAAGGTGCGA-
-AAGGTGTKAA
 T A C G C G T A G T C A A C T G A T C G C G A T A T C G T G A C A C T G T G C A A C G T
A C G T C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A

TBX15/MA0803.1/Jaspar

Match Rank:4
Score:0.76
Offset:2
Orientation:forward strand
Alignment:GAAGGTGCGA
--AGGTGTGA
 T A C G C G T A G T C A A C T G A T C G C G A T A T C G T G A C A C T G T G C A
A C G T A C G T C T G A C T A G T C A G A C G T A T C G A G C T A C T G C T G A

TBX1/MA0805.1/Jaspar

Match Rank:5
Score:0.75
Offset:2
Orientation:forward strand
Alignment:GAAGGTGCGA
--AGGTGTGA
 T A C G C G T A G T C A A C T G A T C G C G A T A T C G T G A C A C T G T G C A
A C G T A C G T C T G A T C A G A C T G A G C T A T C G G A C T A C T G T G C A

MGA/MA0801.1/Jaspar

Match Rank:6
Score:0.74
Offset:2
Orientation:forward strand
Alignment:GAAGGTGCGA
--AGGTGTGA
 T A C G C G T A G T C A A C T G A T C G C G A T A T C G T G A C A C T G T G C A
A C G T A C G T C T G A T C A G A T C G A G C T C T A G G A C T A C T G C T G A

TBX4/MA0806.1/Jaspar

Match Rank:7
Score:0.74
Offset:2
Orientation:forward strand
Alignment:GAAGGTGCGA
--AGGTGTGA
 T A C G C G T A G T C A A C T G A T C G C G A T A T C G T G A C A C T G T G C A
A C G T A C G T C T G A T C A G T A C G A G C T A C T G G A C T A C T G C T G A

TBX5/MA0807.1/Jaspar

Match Rank:8
Score:0.72
Offset:2
Orientation:forward strand
Alignment:GAAGGTGCGA
--AGGTGTGA
 T A C G C G T A G T C A A C T G A T C G C G A T A T C G T G A C A C T G T G C A
A C G T A C G T C T G A T C A G A C T G A C G T C T A G A G C T A C T G C T G A

TBX2/MA0688.1/Jaspar

Match Rank:9
Score:0.72
Offset:1
Orientation:forward strand
Alignment:GAAGGTGCGA--
-AAGGTGTGAAA
 T A C G C G T A G T C A A C T G A T C G C G A T A T C G T G A C A C T G T G C A A C G T A C G T
A C G T C G T A C T G A T C A G A T C G A G C T C T A G G A C T A C T G C T G A C G T A C G T A

PB0013.1_Eomes_1/Jaspar

Match Rank:10
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--GAAGGTGCGA-----
GAAAAGGTGTGAAAATT
 A C G T A C G T T A C G C G T A G T C A A C T G A T C G C G A T A T C G T G A C A C T G T G C A A C G T A C G T A C G T A C G T A C G T
A C G T T C G A G C T A C T G A C T G A C T A G A C T G A G C T C T A G G A C T A C T G C T G A G T C A G T C A G C T A G A C T G A C T