Information for 8-GCCGCCATAGCGA (Motif 5)

A C T G A G T C A G T C A C T G A G T C A G T C C T G A A C G T T C G A A C T G G T A C A C T G T G C A
Reverse Opposite:
A C G T A G T C A C T G A G T C A G C T T C G A A G C T A C T G C T A G A G T C C T A G T A C G A G T C
p-value:1e-13
log p-value:-3.030e+01
Information Content per bp:1.791
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.35%
Number of Background Sequences with motif27.6
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets35.5 +/- 23.7bp
Average Position of motif in Background53.6 +/- 25.3bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-GCCGCCATAGCGA
NGTTGCCATGGCAA
 A C G T A C T G A G T C A G T C A C T G A G T C A G T C C T G A A C G T T C G A A C T G G T A C A C T G T G C A
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Rfx1/MA0509.1/Jaspar

Match Rank:2
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GCCGCCATAGCGA-
GTTGCCATGGCAAC
 A C T G A G T C A G T C A C T G A G T C A G T C C T G A A C G T T C G A A C T G G T A C A C T G T G C A A C G T
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:3
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GCCGCCATAGCGA--
GTTGCCATGGCAACM
 A C T G A G T C A G T C A C T G A G T C A G T C C T G A A C G T T C G A A C T G G T A C A C T G T G C A A C G T A C G T
C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:4
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GCCGCCATAGCGA---
GTTGCCATGGCAACCG
 A C T G A G T C A G T C A C T G A G T C A G T C C T G A A C G T T C G A A C T G G T A C A C T G T G C A A C G T A C G T A C G T
C T A G A G C T G A C T C T A G A G T C A G T C G T C A C G A T T C A G T C A G G A T C C T G A T C G A G A T C T A G C T C A G

YY2/MA0748.1/Jaspar

Match Rank:5
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GCCGCCATAGCGA
GTCCGCCATTA---
 A C G T A C T G A G T C A G T C A C T G A G T C A G T C C T G A A C G T T C G A A C T G G T A C A C T G T G C A
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T A C G T A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GCCGCCATAGCGA
GGTTGCCATGGCAA
 A C G T A C T G A G T C A G T C A C T G A G T C A G T C C T G A A C G T T C G A A C T G G T A C A C T G T G C A
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

YY1(Zf)/Promoter/Homer

Match Rank:7
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GCCGCCATAGCGA
GCCGCCATCTTG-
 A C T G A G T C A G T C A C T G A G T C A G T C C T G A A C G T T C G A A C T G G T A C A C T G T G C A
C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G A C G T

PB0112.1_E2F2_2/Jaspar

Match Rank:8
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----GCCGCCATAGCGA
CCTTCGGCGCCAAAAGG-
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C A C T G A G T C A G T C C T G A A C G T T C G A A C T G G T A C A C T G T G C A
G A T C T A C G A G C T C G A T G A T C C T A G A T C G T G A C C A T G T A G C G A T C C T G A G T C A C T G A T C G A A C T G A T C G A C G T

RFX4/MA0799.1/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GCCGCCATAGCGA--
CGTTGCCATGGCAACN
 A C G T A C T G A G T C A G T C A C T G A G T C A G T C C T G A A C G T T C G A A C T G G T A C A C T G T G C A A C G T A C G T
A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C G T A G A T C T A C G

PB0113.1_E2F3_2/Jaspar

Match Rank:10
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----GCCGCCATAGCGA
AGCTCGGCGCCAAAAGC-
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C A C T G A G T C A G T C C T G A A C G T T C G A A C T G G T A C A C T G T G C A
G T A C A T C G G A C T C G A T G A T C C T A G A T C G G T A C C A T G T A G C G A T C C G T A G T C A C T G A T G C A A T C G A T G C A C G T