Information for 4-CTGCTGTGTACAC (Motif 4)

A G T C C A G T A T C G G A T C C G A T C T A G A C G T C A T G C A G T G T C A T G A C C G T A T G A C
Reverse Opposite:
A C T G C G A T A C T G C A G T G C T A G T A C G T C A G A T C C G T A C T A G A T G C G T C A T A C G
p-value:1e-16
log p-value:-3.894e+01
Information Content per bp:1.651
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif4.39%
Number of Background Sequences with motif322.5
Percentage of Background Sequences with motif0.68%
Average Position of motif in Targets49.4 +/- 22.7bp
Average Position of motif in Background47.6 +/- 32.5bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0207.1_Zic3_2/Jaspar

Match Rank:1
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----CTGCTGTGTACAC
NNTCCTGCTGTGNNN--
 A C G T A C G T A C G T A C G T A G T C C A G T A T C G G A T C C G A T C T A G A C G T C A T G C A G T G T C A T G A C C G T A T G A C
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----CTGCTGTGTACAC
CCCCCTGCTGTG-----
 A C G T A C G T A C G T A C G T A G T C C A G T A T C G G A T C C G A T C T A G A C G T C A T G C A G T G T C A T G A C C G T A T G A C
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----CTGCTGTGTACAC
TNTCCTGCTGTGNNG--
 A C G T A C G T A C G T A C G T A G T C C A G T A T C G G A T C C G A T C T A G A C G T C A T G C A G T G T C A T G A C C G T A T G A C
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G A C G T A C G T

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:4
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CTGCTGTGTACAC---
NNNVCTGWGYAAACASN
 A C G T A G T C C A G T A T C G G A T C C G A T C T A G A C G T C A T G C A G T G T C A T G A C C G T A T G A C A C G T A C G T A C G T
A T G C C T G A A T C G T A C G A G T C C G A T T C A G C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A T A C G C T G A

Foxo1/MA0480.1/Jaspar

Match Rank:5
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CTGCTGTGTACAC
-TCCTGTTTACA-
 A G T C C A G T A T C G G A T C C G A T C T A G A C G T C A T G C A G T G T C A T G A C C G T A T G A C
A C G T C A G T A T G C A G T C A C G T A C T G A C G T A C G T A C G T G C T A A G T C G C T A A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:6
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----CTGCTGTGTACAC
TCNCCTGCTGNGNNN--
 A C G T A C G T A C G T A C G T A G T C C A G T A T C G G A T C C G A T C T A G A C G T C A T G C A G T G T C A T G A C C G T A T G A C
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:7
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------CTGCTGTGTACAC
GGCCYCCTGCTGDGH----
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C A G T A T C G G A T C C G A T C T A G A C G T C A T G C A G T G T C A T G A C C G T A T G A C
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T A C G T A C G T

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:8
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CTGCTGTGTACAC-
--CNTGTTTACATA
 A G T C C A G T A T C G G A T C C G A T C T A G A C G T C A T G C A G T G T C A T G A C C G T A T G A C A C G T
A C G T A C G T A T G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A G A T C G C T A A G C T C G T A

PB0104.1_Zscan4_1/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CTGCTGTGTACAC-----
-NTNTATGTGCACATNNN
 A G T C C A G T A T C G G A T C C G A T C T A G A C G T C A T G C A G T G T C A T G A C C G T A T G A C A C G T A C G T A C G T A C G T A C G T
A C G T C A G T G C A T C G A T C G A T C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A G A C T A C T G C A G T G T C A

PB0026.1_Gm397_1/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CTGCTGTGTACAC----
CAGATGTGCACATACGT
 A G T C C A G T A T C G G A T C C G A T C T A G A C G T C A T G C A G T G T C A T G A C C G T A T G A C A C G T A C G T A C G T A C G T
G T A C G C T A C A T G C G T A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A A G C T G T C A G T A C C A T G G A C T