Information for 17-AGTGATTTATGGC (Motif 20)

C G T A T A C G G C A T C T A G C T G A A C G T C A G T C A G T T G C A C A G T C T A G T C A G T G A C
Reverse Opposite:
A C T G A G T C G A T C G C T A A C G T G C T A G T C A G T C A G A C T A G T C C G T A A T G C C G A T
p-value:1e-7
log p-value:-1.837e+01
Information Content per bp:1.668
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.63%
Number of Background Sequences with motif4.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets59.4 +/- 14.7bp
Average Position of motif in Background48.2 +/- 18.7bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:1
Score:0.89
Offset:2
Orientation:reverse strand
Alignment:AGTGATTTATGGC-
--TGATTTATGGCC
 C G T A T A C G G C A T C T A G C T G A A C G T C A G T C A G T T G C A C A G T C T A G T C A G T G A C A C G T
A C G T A C G T C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

Hoxc9/MA0485.1/Jaspar

Match Rank:2
Score:0.89
Offset:1
Orientation:reverse strand
Alignment:AGTGATTTATGGC-
-NTGATTTATGGCC
 C G T A T A C G G C A T C T A G C T G A A C G T C A G T C A G T T G C A C A G T C T A G T C A G T G A C A C G T
A C G T T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

Hoxa9/MA0594.1/Jaspar

Match Rank:3
Score:0.87
Offset:2
Orientation:reverse strand
Alignment:AGTGATTTATGGC
--TGATTTATGGC
 C G T A T A C G G C A T C T A G C T G A A C G T C A G T C A G T T G C A C A G T C T A G T C A G T G A C
A C G T A C G T C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:4
Score:0.86
Offset:2
Orientation:reverse strand
Alignment:AGTGATTTATGGC-
--TGATTTATGGCC
 C G T A T A C G G C A T C T A G C T G A A C G T C A G T C A G T T G C A C A G T C T A G T C A G T G A C A C G T
A C G T A C G T C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:5
Score:0.77
Offset:2
Orientation:forward strand
Alignment:AGTGATTTATGGC-
--TGATTRATGGCY
 C G T A T A C G G C A T C T A G C T G A A C G T C A G T C A G T T G C A C A G T C T A G T C A G T G A C A C G T
A C G T A C G T C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:6
Score:0.76
Offset:2
Orientation:reverse strand
Alignment:AGTGATTTATGGC
--TGATTGATGA-
 C G T A T A C G G C A T C T A G C T G A A C G T C A G T C A G T T G C A C A G T C T A G T C A G T G A C
A C G T A C G T C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:7
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:AGTGATTTATGGC-
--DGWTTTATGRCN
 C G T A T A C G G C A T C T A G C T G A A C G T C A G T C A G T T G C A C A G T C T A G T C A G T G A C A C G T
A C G T A C G T C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

Gfi1/MA0038.1/Jaspar

Match Rank:8
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-AGTGATTTATGGC
CNGTGATTTN----
 A C G T C G T A T A C G G C A T C T A G C T G A A C G T C A G T C A G T T G C A C A G T C T A G T C A G T G A C
A T G C C G T A A T C G C G A T A C T G G C T A A C G T A C G T A C G T C T A G A C G T A C G T A C G T A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:9
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:AGTGATTTATGGC
-ATGATKGATGRC
 C G T A T A C G G C A T C T A G C T G A A C G T C A G T C A G T T G C A C A G T C T A G T C A G T G A C
A C G T C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

CDX2/MA0465.1/Jaspar

Match Rank:10
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:AGTGATTTATGGC--
----TTTTATGGCTN
 C G T A T A C G G C A T C T A G C T G A A C G T C A G T C A G T T G C A C A G T C T A G T C A G T G A C A C G T A C G T
A C G T A C G T A C G T A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T