Information for 2-CCACWAGGTGGCA (Motif 3)

A G T C G T A C C G T A T A G C C G A T C T G A C T A G C T A G C A G T A C T G T C A G A T G C T C G A
Reverse Opposite:
A G C T A T C G A G T C A G T C G T C A G A T C G A T C G A C T G C T A A T C G G C A T A C T G T A C G
p-value:1e-16
log p-value:-3.899e+01
Information Content per bp:1.606
Number of Target Sequences with motif50.0
Percentage of Target Sequences with motif6.27%
Number of Background Sequences with motif687.6
Percentage of Background Sequences with motif1.43%
Average Position of motif in Targets44.9 +/- 24.2bp
Average Position of motif in Background51.2 +/- 26.6bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.84
Offset:-3
Orientation:reverse strand
Alignment:---CCACWAGGTGGCA----
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A G T C G T A C C G T A T A G C C G A T C T G A C T A G C T A G C A G T A C T G T C A G A T G C T C G A A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.81
Offset:-3
Orientation:forward strand
Alignment:---CCACWAGGTGGCA---
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T A G T C G T A C C G T A T A G C C G A T C T G A C T A G C T A G C A G T A C T G T C A G A T G C T C G A A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.80
Offset:-1
Orientation:reverse strand
Alignment:-CCACWAGGTGGCA------
GCCASCAGGGGGCGCYVNNG
 A C G T A G T C G T A C C G T A T A G C C G A T C T G A C T A G C T A G C A G T A C T G T C A G A T G C T C G A A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:4
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:CCACWAGGTGGCA
-----ARNTGACA
 A G T C G T A C C G T A T A G C C G A T C T G A C T A G C T A G C A G T A C T G T C A G A T G C T C G A
A C G T A C G T A C G T A C G T A C G T T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A

Hic1/MA0739.1/Jaspar

Match Rank:5
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:CCACWAGGTGGCA-
-----GGTTGGCAT
 A G T C G T A C C G T A T A G C C G A T C T G A C T A G C T A G C A G T A C T G T C A G A T G C T C G A A C G T
A C G T A C G T A C G T A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

MEIS3/MA0775.1/Jaspar

Match Rank:6
Score:0.57
Offset:7
Orientation:forward strand
Alignment:CCACWAGGTGGCA--
-------TTGACAGG
 A G T C G T A C C G T A T A G C C G A T C T G A C T A G C T A G C A G T A C T G T C A G A T G C T C G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G

MEIS1/MA0498.2/Jaspar

Match Rank:7
Score:0.57
Offset:7
Orientation:forward strand
Alignment:CCACWAGGTGGCA-
-------TTGACAG
 A G T C G T A C C G T A T A G C C G A T C T G A C T A G C T A G C A G T A C T G T C A G A T G C T C G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:8
Score:0.57
Offset:5
Orientation:forward strand
Alignment:CCACWAGGTGGCA
-----AGGTGTCA
 A G T C G T A C C G T A T A G C C G A T C T G A C T A G C T A G C A G T A C T G T C A G A T G C T C G A
A C G T A C G T A C G T A C G T A C G T C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A

ZNF354C/MA0130.1/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CCACWAGGTGGCA
ATCCAC---------
 A C G T A C G T A G T C G T A C C G T A T A G C C G A T C T G A C T A G C T A G C A G T A C T G T C A G A T G C T C G A
T G C A G C A T A G T C A G T C C G T A A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:10
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:CCACWAGGTGGCA---
------VBTGWCAGCB
 A G T C G T A C C G T A T A G C C G A T C T G A C T A G C T A G C A G T A C T G T C A G A T G C T C G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C