Information for 6-TTTAATGGCG (Motif 10)

A C G T A C G T A G C T C G T A C G T A A C G T A C T G C T A G A G T C C T A G
Reverse Opposite:
G A T C C T A G G A T C A G T C G T C A G C A T G C A T T C G A C G T A C G T A
p-value:1e-10
log p-value:-2.376e+01
Information Content per bp:1.738
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif2.63%
Number of Background Sequences with motif198.3
Percentage of Background Sequences with motif0.41%
Average Position of motif in Targets49.5 +/- 28.2bp
Average Position of motif in Background49.6 +/- 27.1bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0064.1_Hoxb9/Jaspar

Match Rank:1
Score:0.76
Offset:-4
Orientation:reverse strand
Alignment:----TTTAATGGCG--
NGANTTTTATGGCTCN
 A C G T A C G T A C G T A C G T A C G T A C G T A G C T C G T A C G T A A C G T A C T G C T A G A G T C C T A G A C G T A C G T
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:2
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:TTTAATGGCG
TTTAATTGCN
 A C G T A C G T A G C T C G T A C G T A A C G T A C T G C T A G A G T C C T A G
C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C

PH0056.1_Hoxa9/Jaspar

Match Rank:3
Score:0.75
Offset:-5
Orientation:reverse strand
Alignment:-----TTTAATGGCG--
ANTAATTTTATGGCCGN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C G T A C G T A A C G T A C T G C T A G A G T C C T A G A C G T A C G T
G C T A G A C T G C A T G C T A C G T A G C A T C G A T C G A T C G A T C G T A G A C T C A T G C T A G T A G C G A T C A C T G G A C T

Hoxd9/MA0913.1/Jaspar

Match Rank:4
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-TTTAATGGCG
TTTTTATTGC-
 A C G T A C G T A C G T A G C T C G T A C G T A A C G T A C T G C T A G A G T C C T A G
C G A T G C A T C A G T C G A T C G A T C G T A G A C T A C G T C T A G A G T C A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:5
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-TTTAATGGCG
NTTTTATGAC-
 A C G T A C G T A C G T A G C T C G T A C G T A A C G T A C T G C T A G A G T C C T A G
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T

YY2/MA0748.1/Jaspar

Match Rank:6
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:TTTAATGGCG---
--TAATGGCGGNC
 A C G T A C G T A G C T C G T A C G T A A C G T A C T G C T A G A G T C C T A G A C G T A C G T A C G T
A C G T A C G T G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C

CDX2/MA0465.1/Jaspar

Match Rank:7
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:TTTAATGGCG-
TTTTATGGCTN
 A C G T A C G T A G C T C G T A C G T A A C G T A C T G C T A G A G T C C T A G A C G T
A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

HOXA10/MA0899.1/Jaspar

Match Rank:8
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-TTTAATGGCG
NTTTTATTACN
 A C G T A C G T A C G T A G C T C G T A C G T A A C G T A C T G C T A G A G T C C T A G
C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C

CDX1/MA0878.1/Jaspar

Match Rank:9
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:TTTAATGGCG
TTTTATTGC-
 A C G T A C G T A G C T C G T A C G T A A C G T A C T G C T A G A G T C C T A G
C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T

Arid3a/MA0151.1/Jaspar

Match Rank:10
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:TTTAATGGCG
TTTAAT----
 A C G T A C G T A G C T C G T A C G T A A C G T A C T G C T A G A G T C C T A G
G C A T A C G T A C G T C T G A C G T A A C G T A C G T A C G T A C G T A C G T