Information for 3-CTGCGGGTCG (Motif 6)

A G T C G A C T A T C G A G T C A C T G A C T G A C T G A C G T A T G C T C A G
Reverse Opposite:
A G T C T A C G C G T A G T A C A G T C T G A C A C T G A T G C C T G A A C T G
p-value:1e-9
log p-value:-2.185e+01
Information Content per bp:1.776
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif4.27%
Number of Background Sequences with motif594.4
Percentage of Background Sequences with motif1.21%
Average Position of motif in Targets51.6 +/- 24.9bp
Average Position of motif in Background50.6 +/- 27.3bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0153.1_Nr2f2_2/Jaspar

Match Rank:1
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--CTGCGGGTCG----
CGCGCCGGGTCACGTA
 A C G T A C G T A G T C G A C T A T C G A G T C A C T G A C T G A C T G A C G T A T G C T C A G A C G T A C G T A C G T A C G T
T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A

PB0024.1_Gcm1_1/Jaspar

Match Rank:2
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----CTGCGGGTCG--
NNNNATGCGGGTNNNN
 A C G T A C G T A C G T A C G T A G T C G A C T A T C G A G T C A C T G A C T G A C T G A C G T A T G C T C A G A C G T A C G T
G T C A C T G A G C A T A C T G T C G A G A C T T C A G A T G C C A T G A C T G A C T G A G C T C G T A A G T C A C T G C G T A

GCM2/MA0767.1/Jaspar

Match Rank:3
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CTGCGGGTCG
TATGCGGGTA-
 A C G T A G T C G A C T A T C G A G T C A C T G A C T G A C T G A C G T A T G C T C A G
A C G T T C G A A G C T T C A G A T G C C A T G A C T G C T A G G A C T C T G A A C G T

GCM1/MA0646.1/Jaspar

Match Rank:4
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CTGCGGGTCG
CATGCGGGTAC
 A C G T A G T C G A C T A T C G A G T C A C T G A C T G A C T G A C G T A T G C T C A G
A G T C T C G A G C A T T C A G G T A C C A T G A C T G A T C G A G C T T C G A A T G C

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:5
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CTGCGGGTCG
CAGCTGNT--
 A G T C G A C T A T C G A G T C A C T G A C T G A C T G A C G T A T G C T C A G
G T A C C G T A A C T G T G A C C G A T A C T G A G T C G A C T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:6
Score:0.63
Offset:4
Orientation:forward strand
Alignment:CTGCGGGTCG
----AGGTCA
 A G T C G A C T A T C G A G T C A C T G A C T G A C T G A C G T A T G C T C A G
A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CTGCGGGTCG
NCAGCTGCTG-
 A C G T A G T C G A C T A T C G A G T C A C T G A C T G A C T G A C G T A T G C T C A G
T C G A A G T C C G T A A T C G A T G C C G A T A C T G A G T C A G C T A C T G A C G T

TFAP4/MA0691.1/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CTGCGGGTCG
ATCAGCTGTT--
 A C G T A C G T A G T C G A C T A T C G A G T C A C T G A C T G A C T G A C G T A T G C T C A G
T C G A G C A T A T G C C G T A A T C G T A G C A C G T A C T G C G A T A C G T A C G T A C G T

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:9
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CTGCGGGTCG
CCAGCTGTTN-
 A C G T A G T C G A C T A T C G A G T C A C T G A C T G A C T G A C G T A T G C T C A G
T G A C G T A C C T G A A C T G T G A C G C A T C A T G A C G T A C G T G C T A A C G T

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:10
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CTGCGGGTCG
HCAGCTGDTN-
 A C G T A G T C G A C T A T C G A G T C A C T G A C T G A C T G A C G T A T G C T C A G
G T C A A G T C C G T A A C T G G T A C G C A T C T A G C G A T A C G T C A G T A C G T