Information for 5-CAGCACCTCCTCACAG (Motif 12)

A G T C C G T A A C T G A G T C C T G A A T G C A G T C A G C T A G T C A G T C G A C T G T A C T G C A A G T C G T C A C T A G
Reverse Opposite:
A G T C A C G T A C T G A C G T A C T G C G T A A C T G T A C G C T G A C T A G T A C G A G C T A C T G A G T C C G A T C T A G
p-value:1e-8
log p-value:-1.999e+01
Information Content per bp:1.790
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif12.7
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets58.1 +/- 23.3bp
Average Position of motif in Background41.1 +/- 29.4bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CAGCACCTCCTCACAG
SNGCACCTGCHS----
 A G T C C G T A A C T G A G T C C T G A A T G C A G T C A G C T A G T C A G T C G A C T G T A C T G C A A G T C G T C A C T A G
T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C A C G T A C G T A C G T A C G T

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:2
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CAGCACCTCCTCACAG
ADGGYAGYAGCATCT-----
 A C G T A C G T A C G T A C G T A G T C C G T A A C T G A G T C C T G A A T G C A G T C A G C T A G T C A G T C G A C T G T A C T G C A A G T C G T C A C T A G
C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T A C G T A C G T A C G T A C G T A C G T

PB0003.1_Ascl2_1/Jaspar

Match Rank:3
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CAGCACCTCCTCACAG
CTCAGCAGCTGCTACTG-
 A C G T A C G T A G T C C G T A A C T G A G T C C T G A A T G C A G T C A G C T A G T C A G T C G A C T G T A C T G C A A G T C G T C A C T A G
A G T C A C G T A G T C T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T G A C G A T C G C A T C A T G A C G T

Ascl2/MA0816.1/Jaspar

Match Rank:4
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CAGCACCTCCTCACAG
-AGCAGCTGCT-----
 A G T C C G T A A C T G A G T C C T G A A T G C A G T C A G C T A G T C A G T C G A C T G T A C T G C A A G T C G T C A C T A G
A C G T T C G A T C A G G T A C C G T A A T C G T G A C C G A T A C T G A G T C G A C T A C G T A C G T A C G T A C G T A C G T

PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:5
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:CAGCACCTCCTCACAG
---CACTTCCTCT---
 A G T C C G T A A C T G A G T C C T G A A T G C A G T C A G C T A G T C A G T C G A C T G T A C T G C A A G T C G T C A C T A G
A C G T A C G T A C G T A T G C C T G A A T G C C G A T A C G T A G T C A G T C A G C T A T G C G C A T A C G T A C G T A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:6
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CAGCACCTCCTCACAG
-CGCAGCTGCG-----
 A G T C C G T A A C T G A G T C C T G A A T G C A G T C A G C T A G T C A G T C G A C T G T A C T G C A A G T C G T C A C T A G
A C G T T G A C T C A G G T A C T G C A A T C G T A G C A C G T T A C G G A T C A C T G A C G T A C G T A C G T A C G T A C G T

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:7
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CAGCACCTCCTCACAG
NNAGCAGCTGCT-----
 A C G T A G T C C G T A A C T G A G T C C T G A A T G C A G T C A G C T A G T C A G T C G A C T G T A C T G C A A G T C G T C A C T A G
T C A G T A G C C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A C G T A C G T A C G T A C G T A C G T

Myod1/MA0499.1/Jaspar

Match Rank:8
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CAGCACCTCCTCACAG
-TGCAGCTGTCCCT--
 A G T C C G T A A C T G A G T C C T G A A T G C A G T C A G C T A G T C A G T C G A C T G T A C T G C A A G T C G T C A C T A G
A C G T G C A T T A C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G T C T A G C A G T C A G C T A C G T A C G T

EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer

Match Rank:9
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CAGCACCTCCTCACAG--
GGYAGCAYDTGCTDCCCNNN
 A C G T A C G T A G T C C G T A A C T G A G T C C T G A A T G C A G T C A G C T A G T C A G T C G A C T G T A C T G C A A G T C G T C A C T A G A C G T A C G T
A C T G C T A G G A T C C G T A C T A G A G T C T G C A G A C T C G T A A C G T T C A G A G T C A C G T C T G A A G T C A G T C G A T C C G T A T C A G T A C G

TCF3/MA0522.2/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CAGCACCTCCTCACAG
-AACACCTGCT-----
 A G T C C G T A A C T G A G T C C T G A A T G C A G T C A G C T A G T C A G T C G A C T G T A C T G C A A G T C G T C A C T A G
A C G T G T C A T C G A A G T C G C T A A T G C A T G C G C A T T C A G A G T C C A G T A C G T A C G T A C G T A C G T A C G T