Information for 9-GCATGGATTA (Motif 18)

C T A G A G T C C G T A A C G T A C T G A C T G C G T A A C G T A C G T C G T A
Reverse Opposite:
A C G T C G T A C G T A A C G T A G T C A G T C C G T A A C G T A C T G A G T C
p-value:1e-3
log p-value:-8.790e+00
Information Content per bp:1.962
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.24%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets43.0 +/- 36.1bp
Average Position of motif in Background32.7 +/- 21.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0185.1_Tcf1_2/Jaspar

Match Rank:1
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--GCATGGATTA--
TTGCCCGGATTAGG
 A C G T A C G T C T A G A G T C C G T A A C G T A C T G A C T G C G T A A C G T A C G T C G T A A C G T A C G T
C G A T A C G T T C A G G A T C T A G C A G T C T A C G A C T G C T G A C A G T A C G T C G T A C A T G C T A G

Pitx1/MA0682.1/Jaspar

Match Rank:2
Score:0.77
Offset:3
Orientation:reverse strand
Alignment:GCATGGATTA-
---GGGATTAA
 C T A G A G T C C G T A A C G T A C T G A C T G C G T A A C G T A C G T C G T A A C G T
A C G T A C G T A C G T C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:3
Score:0.77
Offset:2
Orientation:reverse strand
Alignment:GCATGGATTA--
--VRGGATTARN
 C T A G A G T C C G T A A C G T A C T G A C T G C G T A A C G T A C G T C G T A A C G T A C G T
A C G T A C G T T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C

GSC/MA0648.1/Jaspar

Match Rank:4
Score:0.76
Offset:2
Orientation:reverse strand
Alignment:GCATGGATTA--
--NNGGATTAGN
 C T A G A G T C C G T A A C G T A C T G A C T G C G T A A C G T A C G T C G T A A C G T A C G T
A C G T A C G T C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:5
Score:0.76
Offset:4
Orientation:reverse strand
Alignment:GCATGGATTA--
----GGATTAGC
 C T A G A G T C C G T A A C G T A C T G A C T G C G T A A C G T A C G T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C

PITX3/MA0714.1/Jaspar

Match Rank:6
Score:0.76
Offset:3
Orientation:reverse strand
Alignment:GCATGGATTA--
---GGGATTANN
 C T A G A G T C C G T A A C G T A C T G A C T G C G T A A C G T A C G T C G T A A C G T A C G T
A C G T A C G T A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:7
Score:0.74
Offset:3
Orientation:forward strand
Alignment:GCATGGATTA-
---RGGATTAR
 C T A G A G T C C G T A A C G T A C T G A C T G C G T A A C G T A C G T C G T A A C G T
A C G T A C G T A C G T T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:8
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:GCATGGATTA
--NGGGATTA
 C T A G A G T C C G T A A C G T A C T G A C T G C G T A A C G T A C G T C G T A
A C G T A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A

OTX2/MA0712.1/Jaspar

Match Rank:9
Score:0.74
Offset:3
Orientation:reverse strand
Alignment:GCATGGATTA-
---NGGATTAA
 C T A G A G T C C G T A A C G T A C T G A C T G C G T A A C G T A C G T C G T A A C G T
A C G T A C G T A C G T T G C A T C A G C T A G G T C A A C G T G C A T C G T A C T G A

OTX1/MA0711.1/Jaspar

Match Rank:10
Score:0.73
Offset:3
Orientation:reverse strand
Alignment:GCATGGATTA-
---CGGATTAN
 C T A G A G T C C G T A A C G T A C T G A C T G C G T A A C G T A C G T C G T A A C G T
A C G T A C G T A C G T T A G C T A C G A T C G G T C A A C G T G C A T C G T A C T G A