Information for 1-CCCCCAGCCGCCTTCC (Motif 1)

A G T C G T A C A T G C A G T C A G T C C T G A A C T G A G T C A G T C A C T G A G T C A G T C A G C T A G C T A T G C A G T C
Reverse Opposite:
A C T G A T C G C T G A C T G A C T A G A C T G T G A C C T A G A C T G A G T C A G C T A C T G A C T G A T C G A C T G A C T G
p-value:1e-12
log p-value:-2.920e+01
Information Content per bp:1.849
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif3.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.0 +/- 18.6bp
Average Position of motif in Background56.5 +/- 16.8bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZIC3/MA0697.1/Jaspar

Match Rank:1
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CCCCCAGCCGCCTTCC
GACCCCCCGCTGCGC---
 A C G T A C G T A G T C G T A C A T G C A G T C A G T C C T G A A C T G A G T C A G T C A C T G A G T C A G T C A G C T A G C T A T G C A G T C
A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C A C G T A C G T A C G T

SP2/MA0516.1/Jaspar

Match Rank:2
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CCCCCAGCCGCCTTCC
-GCCCCGCCCCCTCCC
 A G T C G T A C A T G C A G T C A G T C C T G A A C T G A G T C A G T C A C T G A G T C A G T C A G C T A G C T A T G C A G T C
A C G T A T C G A G T C G A T C A T G C A G T C C A T G A G T C A G T C A G T C G A T C G A T C A G C T A T G C A T G C A T G C

ZIC4/MA0751.1/Jaspar

Match Rank:3
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CCCCCAGCCGCCTTCC
GACCCCCCGCTGTGC---
 A C G T A C G T A G T C G T A C A T G C A G T C A G T C C T G A A C T G A G T C A G T C A C T G A G T C A G T C A G C T A G C T A T G C A G T C
A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C A C G T A C G T A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:4
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CCCCCAGCCGCCTTCC
GACCCCCCGCTGTG----
 A C G T A C G T A G T C G T A C A T G C A G T C A G T C C T G A A C T G A G T C A G T C A C T G A G T C A G T C A G C T A G C T A T G C A G T C
A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G A C G T A C G T A C G T A C G T

Myog/MA0500.1/Jaspar

Match Rank:5
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CCCCCAGCCGCCTTCC
-NNGCAGCTGTC----
 A G T C G T A C A T G C A G T C A G T C C T G A A C T G A G T C A G T C A C T G A G T C A G T C A G C T A G C T A T G C A G T C
A C G T A T G C G A C T A T C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G T C A C G T A C G T A C G T A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:6
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CCCCCAGCCGCCTTCC
TACGCCCCGCCACTCTG-
 A C G T A C G T A G T C G T A C A T G C A G T C A G T C C T G A A C T G A G T C A G T C A C T G A G T C A G T C A G C T A G C T A T G C A G T C
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:7
Score:0.52
Offset:2
Orientation:forward strand
Alignment:CCCCCAGCCGCCTTCC
--CGCAGCTGCG----
 A G T C G T A C A T G C A G T C A G T C C T G A A C T G A G T C A G T C A C T G A G T C A G T C A G C T A G C T A T G C A G T C
A C G T A C G T T G A C T C A G G T A C T G C A A T C G T A G C A C G T T A C G G A T C A C T G A C G T A C G T A C G T A C G T

Tcf12/MA0521.1/Jaspar

Match Rank:8
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:CCCCCAGCCGCCTTCC
-NNGCAGCTGTT----
 A G T C G T A C A T G C A G T C A G T C C T G A A C T G A G T C A G T C A C T G A G T C A G T C A G C T A G C T A T G C A G T C
A C G T A T G C G C A T A T C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G C T A C G T A C G T A C G T A C G T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.52
Offset:3
Orientation:forward strand
Alignment:CCCCCAGCCGCCTTCC
---NCAGCTGCTG---
 A G T C G T A C A T G C A G T C A G T C C T G A A C T G A G T C A G T C A C T G A G T C A G T C A G C T A G C T A T G C A G T C
A C G T A C G T A C G T T C G A A G T C C G T A A T C G A T G C C G A T A C T G A G T C A G C T A C T G A C G T A C G T A C G T

PB0124.1_Gabpa_2/Jaspar

Match Rank:10
Score:0.51
Offset:7
Orientation:forward strand
Alignment:CCCCCAGCCGCCTTCC-------
-------CCGTCTTCCCCCTCAC
 A G T C G T A C A T G C A G T C A G T C C T G A A C T G A G T C A G T C A C T G A G T C A G T C A G C T A G C T A T G C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C A G T C C A T G A C G T G A T C G C A T G A C T G A T C A G T C A T G C G T A C G A T C A G C T T A G C T G C A G A T C