Information for 10-GCGGACATTA (Motif 17)

A C T G A G T C C T A G A C T G G T C A A G T C C G T A A G C T A C G T C G T A
Reverse Opposite:
A C G T C G T A C T G A A C G T A C T G A C G T G T A C A G T C T A C G A G T C
p-value:1e-9
log p-value:-2.199e+01
Information Content per bp:1.871
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.89%
Number of Background Sequences with motif13.4
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets60.5 +/- 22.5bp
Average Position of motif in Background46.4 +/- 28.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HINFP/MA0131.2/Jaspar

Match Rank:1
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--GCGGACATTA
NCGCGGACGTTG
 A C G T A C G T A C T G A G T C C T A G A C T G G T C A A G T C C G T A A G C T A C G T C G T A
T G A C G T A C T A C G T A G C C T A G A T C G C G T A T A G C T A C G A G C T A C G T T A C G

PH0073.1_Hoxc9/Jaspar

Match Rank:2
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GCGGACATTA-----
GGAGGTCATTAATTAT
 A C G T A C T G A G T C C T A G A C T G G T C A A G T C C G T A A G C T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
T C A G C A T G T C G A C T A G T C A G G A C T G T A C C T G A G C A T G C A T C G T A G C T A G A C T G A C T C G T A A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.65
Offset:2
Orientation:forward strand
Alignment:GCGGACATTA--
--GGCCATTAAC
 A C T G A G T C C T A G A C T G G T C A A G T C C G T A A G C T A C G T C G T A A C G T A C G T
A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:4
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:GCGGACATTA--
----YCATTAMC
 A C T G A G T C C T A G A C T G G T C A A G T C C G T A A G C T A C G T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A G C T T G A C C G T A A C G T A C G T C G T A G T C A T G A C

HOXB3/MA0903.1/Jaspar

Match Rank:5
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GCGGACATTA--
--ACTAATTAGC
 A C T G A G T C C T A G A C T G G T C A A G T C C G T A A G C T A C G T C G T A A C G T A C G T
A C G T A C G T C T G A T A G C G A C T T G C A T C G A A G C T G A C T G C T A T C A G T G A C

BARX1/MA0875.1/Jaspar

Match Rank:6
Score:0.62
Offset:3
Orientation:forward strand
Alignment:GCGGACATTA-
---GCAATTAG
 A C T G A G T C C T A G A C T G G T C A A G T C C G T A A G C T A C G T C G T A A C G T
A C G T A C G T A C G T T C A G G A T C T G C A T G C A A C G T A C G T C G T A T C A G

HOXB2/MA0902.1/Jaspar

Match Rank:7
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GCGGACATTA--
--AGTAATTAAC
 A C T G A G T C C T A G A C T G G T C A A G T C C G T A A G C T A C G T C G T A A C G T A C G T
A C G T A C G T T C G A T A C G G A C T T G C A T C G A A C G T G A C T G C T A T C G A T G A C

EVX2/MA0888.1/Jaspar

Match Rank:8
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GCGGACATTA--
--GGTAATTAGC
 A C T G A G T C C T A G A C T G G T C A A G T C C G T A A G C T A C G T C G T A A C G T A C G T
A C G T A C G T T A C G T A C G G A C T T G C A T C G A A C G T A G C T C T G A T A C G A T G C

EVX1/MA0887.1/Jaspar

Match Rank:9
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GCGGACATTA--
--GGTAATTAGC
 A C T G A G T C C T A G A C T G G T C A A G T C C G T A A G C T A C G T C G T A A C G T A C G T
A C G T A C G T T C A G T A C G G A C T T C G A T C G A A C G T G A C T C T G A A T C G T A G C

BSX/MA0876.1/Jaspar

Match Rank:10
Score:0.60
Offset:3
Orientation:forward strand
Alignment:GCGGACATTA-
---CCAATTAA
 A C T G A G T C C T A G A C T G G T C A A G T C C G T A A G C T A C G T C G T A A C G T
A C G T A C G T A C G T T A G C G A T C T G C A T C G A A C G T C G A T C G T A T C G A