Information for 3-CAGCCACTCACCA (Motif 4)

A T G C C G T A T A C G A T G C A G T C G T C A A G T C A C G T A G T C C G T A G T A C G T A C T G C A
Reverse Opposite:
A C G T A C T G A C T G A C G T A C T G C G T A A C T G A C G T C T A G A T C G A G T C A C G T A T C G
p-value:1e-11
log p-value:-2.664e+01
Information Content per bp:1.824
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.39%
Number of Background Sequences with motif39.7
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets58.9 +/- 30.0bp
Average Position of motif in Background55.1 +/- 25.9bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:1
Score:0.76
Offset:1
Orientation:forward strand
Alignment:CAGCCACTCACCA
-AGCCACTCAAG-
 A T G C C G T A T A C G A T G C A G T C G T C A A G T C A C G T A G T C C G T A G T A C G T A C T G C A
A C G T C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:2
Score:0.71
Offset:1
Orientation:forward strand
Alignment:CAGCCACTCACCA
-AAGCACTTAA--
 A T G C C G T A T A C G A T G C A G T C G T C A A G T C A C G T A G T C C G T A G T A C G T A C T G C A
A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:3
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:CAGCCACTCACCA
-MRSCACTYAA--
 A T G C C G T A T A C G A T G C A G T C G T C A A G T C A C G T A G T C C G T A G T A C G T A C T G C A
A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.69
Offset:1
Orientation:forward strand
Alignment:CAGCCACTCACCA
-AASCACTCAA--
 A T G C C G T A T A C G A T G C A G T C G T C A A G T C A C G T A G T C C G T A G T A C G T A C T G C A
A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CAGCCACTCACCA
CRCCCACGCA---
 A T G C C G T A T A C G A T G C A G T C G T C A A G T C A C G T A G T C C G T A G T A C G T A C T G C A
G A T C C T G A A G T C T G A C A G T C G T C A A G T C C T A G A G T C G T C A A C G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:6
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CAGCCACTCACCA
ACTAGCCAATCA---
 A C G T A C G T A T G C C G T A T A C G A T G C A G T C G T C A A G T C A C G T A G T C C G T A G T A C G T A C T G C A
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:7
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CAGCCACTCACCA
SCTGTCAVTCAV--
 A C G T A T G C C G T A T A C G A T G C A G T C G T C A A G T C A C G T A G T C C G T A G T A C G T A C T G C A
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T A C G T

PH0115.1_Nkx2-6/Jaspar

Match Rank:8
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CAGCCACTCACCA--
TAAGCCACTTAACATT
 A C G T A T G C C G T A T A C G A T G C A G T C G T C A A G T C A C G T A G T C C G T A G T A C G T A C T G C A A C G T A C G T
C A G T C T G A C T G A C A T G T A G C A G T C C G T A G T A C A C G T A G C T C T G A C G T A T G A C G C T A G A C T G A C T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CAGCCACTCACCA
NCTGTCAATCAN--
 A C G T A T G C C G T A T A C G A T G C A G T C G T C A A G T C A C G T A G T C C G T A G T A C G T A C T G C A
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:10
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CAGCCACTCACCA
--RSCACTYRAG-
 A T G C C G T A T A C G A T G C A G T C G T C A A G T C A C G T A G T C C G T A G T A C G T A C T G C A
A C G T A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G A C G T