Information for 12-GGGCTDTCAGCCA (Motif 20)

A C T G C T A G A C T G A G T C A C G T C A G T A C G T A G T C C G T A A C T G A G T C A G T C C G T A
Reverse Opposite:
A C G T A C T G A C T G A G T C C G A T A C T G C G T A G A C T C G T A A C T G A G T C A G T C A G T C
p-value:1e-9
log p-value:-2.150e+01
Information Content per bp:1.898
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.59%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets31.4 +/- 18.5bp
Average Position of motif in Background51.1 +/- 11.9bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GGGCTDTCAGCCA-
TGGCAGNCTGCCAG
 A C T G C T A G A C T G A G T C A C G T C A G T A C G T A G T C C G T A A C T G A G T C A G T C C G T A A C G T
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:2
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GGGCTDTCAGCCA
-GSCTGTCACTCA
 A C T G C T A G A C T G A G T C A C G T C A G T A C G T A G T C C G T A A C T G A G T C A G T C C G T A
A C G T C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GGGCTDTCAGCCA-
CTTGGCANNNTGCCAA
 A C G T A C G T A C T G C T A G A C T G A G T C A C G T C A G T A C G T A G T C C G T A A C T G A G T C A G T C C G T A A C G T
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GGGCTDTCAGCCA-
--NCTGTCAATCAN
 A C T G C T A G A C T G A G T C A C G T C A G T A C G T A G T C C G T A A C T G A G T C A G T C C G T A A C G T
A C G T A C G T T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:5
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GGGCTDTCAGCCA
TTGGCATGGTGCCA
 A C G T A C T G C T A G A C T G A G T C A C G T C A G T A C G T A G T C C G T A A C T G A G T C A G T C C G T A
G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:6
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GGGCTDTCAGCCA
-VGCTGWCAVB--
 A C T G C T A G A C T G A G T C A C G T C A G T A C G T A G T C C G T A A C T G A G T C A G T C C G T A
A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:7
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GGGCTDTCAGCCA-
--SCTGTCAVTCAV
 A C T G C T A G A C T G A G T C A C G T C A G T A C G T A G T C C G T A A C T G A G T C A G T C C G T A A C G T
A C G T A C G T T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

NFIC/MA0161.1/Jaspar

Match Rank:8
Score:0.57
Offset:8
Orientation:reverse strand
Alignment:GGGCTDTCAGCCA-
--------TGCCAA
 A C T G C T A G A C T G A G T C A C G T C A G T A C G T A G T C C G T A A C T G A G T C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:9
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GGGCTDTCAGCCA-
--SCTGTCARCACC
 A C T G C T A G A C T G A G T C A C G T C A G T A C G T A G T C C G T A A C T G A G T C A G T C C G T A A C G T
A C G T A C G T T A G C G A T C C G A T C A T G G C A T A G T C G T C A C T G A A G T C C T G A T A G C A G T C

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:10
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GGGCTDTCAGCCA---
---CTGTCTGTCACCT
 A C T G C T A G A C T G A G T C A C G T C A G T A C G T A G T C C G T A A C T G A G T C A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T