Information for 3-TGGGGGCAGTGGTGAG (Motif 5)

C G A T A C T G A C T G C T A G A C T G C T A G A G T C C G T A A C T G C G A T A C T G A T C G C A G T A C T G C G T A A T C G
Reverse Opposite:
A T G C A C G T A G T C G T C A A T G C A G T C C G T A A G T C A C G T A C T G A G T C A G T C A G T C A G T C A G T C C G T A
p-value:1e-13
log p-value:-3.061e+01
Information Content per bp:1.869
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets67.2 +/- 24.9bp
Average Position of motif in Background74.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR2C2/MA0504.1/Jaspar

Match Rank:1
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TGGGGGCAGTGGTGAG
AGGGGTCAGAGGTCA-
 C G A T A C T G A C T G C T A G A C T G C T A G A G T C C G T A A C T G C G A T A C T G A T C G C A G T A C T G C G T A A T C G
T G C A T C A G T C A G A C T G C A T G C A G T A T G C C T G A C T A G C T G A C T A G C A T G A C G T A G T C C T G A A C G T

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:2
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TGGGGGCAGTGGTGAG
-TGGGGCAAAGGTCA-
 C G A T A C T G A C T G C T A G A C T G C T A G A G T C C G T A A C T G C G A T A C T G A T C G C A G T A C T G C G T A A T C G
A C G T C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:3
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TGGGGGCAGTGGTGAG
-TAGGGCAAAGGTCA-
 C G A T A C T G A C T G C T A G A C T G C T A G A G T C C G T A A C T G C G A T A C T G A T C G C A G T A C T G C G T A A T C G
A C G T A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:4
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TGGGGGCAGTGGTGAG
GTAGGGCAAAGGTCA-
 C G A T A C T G A C T G C T A G A C T G C T A G A G T C C G T A A C T G C G A T A C T G A T C G C A G T A C T G C G T A A T C G
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:5
Score:0.59
Offset:1
Orientation:forward strand
Alignment:TGGGGGCAGTGGTGAG
-GAGGTCAAAGGTCA-
 C G A T A C T G A C T G C T A G A C T G C T A G A G T C C G T A A C T G C G A T A C T G A T C G C A G T A C T G C G T A A T C G
A C G T T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A A C G T

THAP1/MA0597.1/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TGGGGGCAGTGGTGAG
TNNGGGCAG-------
 C G A T A C T G A C T G C T A G A C T G C T A G A G T C C G T A A C T G C G A T A C T G A T C G C A G T A C T G C G T A A T C G
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL003.1_GC-box/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TGGGGGCAGTGGTGAG
AGGGGGCGGGGCTG--
 C G A T A C T G A C T G C T A G A C T G C T A G A G T C C G T A A C T G C G A T A C T G A T C G C A G T A C T G C G T A A T C G
C G T A C T A G C A T G T C A G A C T G C T A G G T A C C T A G A C T G C T A G C A T G A G T C A G C T C A T G A C G T A C G T

EGR1/MA0162.2/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TGGGGGCAGTGGTGAG
GGCGGGGGCGGGGG----
 A C G T A C G T C G A T A C T G A C T G C T A G A C T G C T A G A G T C C G T A A C T G C G A T A C T G A T C G C A G T A C T G C G T A A T C G
A C T G T A C G G T A C C T A G C A T G T C A G C T A G A C T G G A T C C T A G C A T G T C A G C T A G T A C G A C G T A C G T A C G T A C G T

RXRB/MA0855.1/Jaspar

Match Rank:9
Score:0.55
Offset:1
Orientation:forward strand
Alignment:TGGGGGCAGTGGTGAG
-GGGGTCAAAGGTCA-
 C G A T A C T G A C T G C T A G A C T G C T A G A G T C C G T A A C T G C G A T A C T G A T C G C A G T A C T G C G T A A T C G
A C G T T C A G T C A G C T A G C A T G A C G T A G T C C T G A C T G A T C G A C A T G C A T G A C G T A G T C T C G A A C G T

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:TGGGGGCAGTGGTGAG
RGKGGGCGGAGC----
 C G A T A C T G A C T G C T A G A C T G C T A G A G T C C G T A A C T G C G A T A C T G A T C G C A G T A C T G C G T A A T C G
C T G A T C A G C A G T C T A G A C T G C T A G G A T C A T C G A C T G C T G A T C A G G A T C A C G T A C G T A C G T A C G T