Information for 3-AGGGATCYYTGCAGCC (Motif 3)

G T C A A T C G T C A G A C T G G T C A A G C T A G T C A G T C A G T C A C G T A C T G G T A C C G T A A T C G T G A C T A G C
Reverse Opposite:
A T C G A C T G A T G C A C G T A C T G A G T C G T C A C T A G C T A G T A C G T C G A C A G T G T A C A G T C A T G C A C G T
p-value:1e-15
log p-value:-3.511e+01
Information Content per bp:1.709
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.33%
Number of Background Sequences with motif12.6
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets43.5 +/- 20.3bp
Average Position of motif in Background47.6 +/- 25.9bp
Strand Bias (log2 ratio + to - strand density)1.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:1
Score:0.55
Offset:1
Orientation:forward strand
Alignment:AGGGATCYYTGCAGCC
-TGTTKCCTAGCAACM
 G T C A A T C G T C A G A C T G G T C A A G C T A G T C A G T C A G T C A C G T A C T G G T A C C G T A A T C G T G A C T A G C
A C G T C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.55
Offset:10
Orientation:reverse strand
Alignment:AGGGATCYYTGCAGCC--
----------BCAGACWA
 G T C A A T C G T C A G A C T G G T C A A G C T A G T C A G T C A G T C A C G T A C T G G T A C C G T A A T C G T G A C T A G C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.52
Offset:10
Orientation:reverse strand
Alignment:AGGGATCYYTGCAGCC----
----------CCAGACRSVB
 G T C A A T C G T C A G A C T G G T C A A G C T A G T C A G T C A G T C A C G T A C T G G T A C C G T A A T C G T G A C T A G C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

PB0091.1_Zbtb3_1/Jaspar

Match Rank:4
Score:0.52
Offset:1
Orientation:forward strand
Alignment:AGGGATCYYTGCAGCC--
-AATCGCACTGCATTCCG
 G T C A A T C G T C A G A C T G G T C A A G C T A G T C A G T C A G T C A C G T A C T G G T A C C G T A A T C G T G A C T A G C A C G T A C G T
A C G T C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G

PB0044.1_Mtf1_1/Jaspar

Match Rank:5
Score:0.51
Offset:5
Orientation:reverse strand
Alignment:AGGGATCYYTGCAGCC-----
-----NNTTTGCACACGGCCC
 G T C A A T C G T C A G A C T G G T C A A G C T A G T C A G T C A G T C A C G T A C T G G T A C C G T A A T C G T G A C T A G C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T G A C T C A G T A C G T G A C T A C T G G A T C C T G A A G T C G C T A G A T C A C T G C T A G G A T C T A G C G T A C

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.51
Offset:2
Orientation:forward strand
Alignment:AGGGATCYYTGCAGCC-
--GGCCYCCTGCTGDGH
 G T C A A T C G T C A G A C T G G T C A A G C T A G T C A G T C A G T C A C G T A C T G G T A C C G T A A T C G T G A C T A G C A C G T
A C G T A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.51
Offset:10
Orientation:reverse strand
Alignment:AGGGATCYYTGCAGCC--
----------CCAGACAG
 G T C A A T C G T C A G A C T G G T C A A G C T A G T C A G T C A G T C A C G T A C T G G T A C C G T A A T C G T G A C T A G C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

POL008.1_DCE_S_I/Jaspar

Match Rank:8
Score:0.50
Offset:9
Orientation:reverse strand
Alignment:AGGGATCYYTGCAGCC
---------NGAAGC-
 G T C A A T C G T C A G A C T G G T C A A G C T A G T C A G T C A G T C A C G T A C T G G T A C C G T A A T C G T G A C T A G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A C G T G C A T C G A T A C G T G A C A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.49
Offset:6
Orientation:reverse strand
Alignment:AGGGATCYYTGCAGCC
------CTTGGCAA--
 G T C A A T C G T C A G A C T G G T C A A G C T A G T C A G T C A G T C A C G T A C T G G T A C C G T A A T C G T G A C T A G C
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T

MTF1/MA0863.1/Jaspar

Match Rank:10
Score:0.49
Offset:7
Orientation:forward strand
Alignment:AGGGATCYYTGCAGCC-----
-------TTTGCACACGGCAC
 G T C A A T C G T C A G A C T G G T C A A G C T A G T C A G T C A G T C A C G T A C T G G T A C C G T A A T C G T G A C T A G C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T A C G T G A C T T C A G G T A C C G T A T A G C G T C A A G T C C A T G C A T G A G T C T G C A G A T C