Information for 1-RGCGCCCCCTGGTGGC (Motif 1)

T C A G A T C G A G T C C A T G T G A C A G T C T G A C G A T C A G T C A C G T C T A G T A C G G A C T A C T G T C A G G T A C
Reverse Opposite:
C A T G A G T C A G T C C T G A A T G C A G T C T G C A A C T G C T A G A C T G A C T G A C T G G T A C C T A G T A G C A G T C
p-value:1e-117
log p-value:-2.698e+02
Information Content per bp:1.669
Number of Target Sequences with motif91.0
Percentage of Target Sequences with motif32.97%
Number of Background Sequences with motif377.3
Percentage of Background Sequences with motif0.79%
Average Position of motif in Targets54.5 +/- 23.0bp
Average Position of motif in Background48.9 +/- 30.3bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.97
Offset:-4
Orientation:forward strand
Alignment:----RGCGCCCCCTGGTGGC
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T T C A G A T C G A G T C C A T G T G A C A G T C T G A C G A T C A G T C A C G T C T A G T A C G G A C T A C T G T C A G G T A C
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.94
Offset:-1
Orientation:reverse strand
Alignment:-RGCGCCCCCTGGTGGC--
TAGCGCCCCCTGGTGGCCA
 A C G T T C A G A T C G A G T C C A T G T G A C A G T C T G A C G A T C A G T C A C G T C T A G T A C G G A C T A C T G T C A G G T A C A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.92
Offset:-2
Orientation:forward strand
Alignment:--RGCGCCCCCTGGTGGC--
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T T C A G A T C G A G T C C A T G T G A C A G T C T G A C G A T C A G T C A C G T C T A G T A C G G A C T A C T G T C A G G T A C A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

PB0076.1_Sp4_1/Jaspar

Match Rank:4
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---RGCGCCCCCTGGTGGC
GGTCCCGCCCCCTTCTC--
 A C G T A C G T A C G T T C A G A T C G A G T C C A T G T G A C A G T C T G A C G A T C A G T C A C G T C T A G T A C G G A C T A C T G T C A G G T A C
A C T G C A T G G A C T G T A C G T A C A G T C C T A G A G T C A T G C A G T C G T A C A G T C G A C T G A C T T A G C A G C T A G T C A C G T A C G T

PB0101.1_Zic1_1/Jaspar

Match Rank:5
Score:0.61
Offset:2
Orientation:forward strand
Alignment:RGCGCCCCCTGGTGGC
--CACCCCCGGGGGGG
 T C A G A T C G A G T C C A T G T G A C A G T C T G A C G A T C A G T C A C G T C T A G T A C G G A C T A C T G T C A G G T A C
A C G T A C G T A T G C G T C A G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G A C T G A T C G

PB0103.1_Zic3_1/Jaspar

Match Rank:6
Score:0.61
Offset:2
Orientation:forward strand
Alignment:RGCGCCCCCTGGTGGC-
--CCCCCCCGGGGGGGT
 T C A G A T C G A G T C C A T G T G A C A G T C T G A C G A T C A G T C A C G T C T A G T A C G G A C T A C T G T C A G G T A C A C G T
A C G T A C G T A T G C G T A C G T A C G T A C G T A C A T G C T A G C A C T G T A C G A C T G C A T G C A T G C A T G A T C G A G C T

PB0010.1_Egr1_1/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:forward strand
Alignment:RGCGCCCCCTGGTGGC
TCCGCCCCCGCATT--
 T C A G A T C G A G T C C A T G T G A C A G T C T G A C G A T C A G T C A C G T C T A G T A C G G A C T A C T G T C A G G T A C
G A C T G T A C G A T C T C A G A G T C A T G C A G T C G T A C G A T C A C T G A G T C C G T A G A C T A C G T A C G T A C G T

PB0102.1_Zic2_1/Jaspar

Match Rank:8
Score:0.60
Offset:2
Orientation:forward strand
Alignment:RGCGCCCCCTGGTGGC-
--CCCCCCCGGGGGGGT
 T C A G A T C G A G T C C A T G T G A C A G T C T G A C G A T C A G T C A C G T C T A G T A C G G A C T A C T G T C A G G T A C A C G T
A C G T A C G T A T G C G T A C G T A C G T A C G T A C A T G C T A G C A C T G A T C G A C T G C A T G C A T G C A T G A T C G A C G T

INSM1/MA0155.1/Jaspar

Match Rank:9
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:RGCGCCCCCTGGTGGC
--CGCCCCCTGACA--
 T C A G A T C G A G T C C A T G T G A C A G T C T G A C G A T C A G T C A C G T C T A G T A C G G A C T A C T G T C A G G T A C
A C G T A C G T G A T C C T A G T G A C A G T C A G T C A T G C A G T C C G A T C A T G T C G A G T A C G T C A A C G T A C G T

EGR1/MA0162.2/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--RGCGCCCCCTGGTGGC
CCCCCGCCCCCGCC----
 A C G T A C G T T C A G A T C G A G T C C A T G T G A C A G T C T G A C G A T C A G T C A C G T C T A G T A C G G A C T A C T G T C A G G T A C
A T G C G A T C A G T C G T A C G A T C C T A G A G T C A G T C A G T C G T A C A G T C C A T G A T G C T G A C A C G T A C G T A C G T A C G T