Information for 4-AGGCAAAGGAGCCTRA (Motif 6)

C G T A T A C G A C T G G T A C C G T A G T C A C G T A C T A G T C A G C T G A C T A G A T G C G T A C A C G T C T G A G T C A
Reverse Opposite:
A C G T G A C T G T C A A C T G A T C G G A T C A G C T A G T C A G T C A C G T A C G T G C A T A C T G A G T C A G T C A C G T
p-value:1e-12
log p-value:-2.895e+01
Information Content per bp:1.717
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.19%
Number of Background Sequences with motif12.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets47.9 +/- 25.7bp
Average Position of motif in Background56.0 +/- 27.2bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0166.1_Sox12_2/Jaspar

Match Rank:1
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----AGGCAAAGGAGCCTRA
AAACAGACAAAGGAAT----
 A C G T A C G T A C G T A C G T C G T A T A C G A C T G G T A C C G T A G T C A C G T A C T A G T C A G C T G A C T A G A T G C G T A C A C G T C T G A G T C A
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T A C G T A C G T A C G T A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-AGGCAAAGGAGCCTRA
TATGCWAATBAV-----
 A C G T C G T A T A C G A C T G G T A C C G T A G T C A C G T A C T A G T C A G C T G A C T A G A T G C G T A C A C G T C T G A G T C A
G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G A C G T A C G T A C G T A C G T A C G T

PROX1/MA0794.1/Jaspar

Match Rank:3
Score:0.50
Offset:4
Orientation:forward strand
Alignment:AGGCAAAGGAGCCTRA
----CAAGACGCCTTA
 C G T A T A C G A C T G G T A C C G T A G T C A C G T A C T A G T C A G C T G A C T A G A T G C G T A C A C G T C T G A G T C A
A C G T A C G T A C G T A C G T A G T C C T G A G C T A C T A G T C G A G A T C C A T G G A T C A G T C C A G T A G C T T C G A

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-AGGCAAAGGAGCCTRA
WATGCAAATGAG-----
 A C G T C G T A T A C G A C T G G T A C C G T A G T C A C G T A C T A G T C A G C T G A C T A G A T G C G T A C A C G T C T G A G T C A
G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G A C G T A C G T A C G T A C G T A C G T

STAT1::STAT2/MA0517.1/Jaspar

Match Rank:5
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:AGGCAAAGGAGCCTRA
-GGAAANTGAAACTNA
 C G T A T A C G A C T G G T A C C G T A G T C A C G T A C T A G T C A G C T G A C T A G A T G C G T A C A C G T C T G A G T C A
A C G T T C A G C T A G C T G A C G T A T C G A T G C A G A C T C T A G T C G A C G T A C T G A A T G C G A C T C T A G G T C A

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:6
Score:0.49
Offset:4
Orientation:reverse strand
Alignment:AGGCAAAGGAGCCTRA--------
----GAAGTANCACGAATNMRAGT
 C G T A T A C G A C T G G T A C C G T A G T C A C G T A C T A G T C A G C T G A C T A G A T G C G T A C A C G T C T G A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G C T G A C T G A C T A G G A C T C T G A T A C G A G T C G C T A G A T C C T A G T C G A T G C A G A C T A C G T G T C A T C A G C T G A C A T G G A C T

POU2F2/MA0507.1/Jaspar

Match Rank:7
Score:0.48
Offset:-2
Orientation:reverse strand
Alignment:--AGGCAAAGGAGCCTRA
ATATGCAAATNNN-----
 A C G T A C G T C G T A T A C G A C T G G T A C C G T A G T C A C G T A C T A G T C A G C T G A C T A G A T G C G T A C A C G T C T G A G T C A
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A A C G T A C G T A C G T A C G T A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.48
Offset:-2
Orientation:reverse strand
Alignment:--AGGCAAAGGAGCCTRA
TTATGCAAAT--------
 A C G T A C G T C G T A T A C G A C T G G T A C C G T A G T C A C G T A C T A G T C A G C T G A C T A G A T G C G T A C A C G T C T G A G T C A
C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:9
Score:0.48
Offset:-1
Orientation:reverse strand
Alignment:-AGGCAAAGGAGCCTRA
AAAACAAAGG-------
 A C G T C G T A T A C G A C T G G T A C C G T A G T C A C G T A C T A G T C A G C T G A C T A G A T G C G T A C A C G T C T G A G T C A
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:10
Score:0.47
Offset:1
Orientation:forward strand
Alignment:AGGCAAAGGAGCCTRA--
-GGGRAARRGRMCAGMTG
 C G T A T A C G A C T G G T A C C G T A G T C A C G T A C T A G T C A G C T G A C T A G A T G C G T A C A C G T C T G A G T C A A C G T A C G T
A C G T C A T G A C T G C T A G T C G A T C G A T C G A T C G A T C A G T C A G T C A G T G A C T G A C C G T A A C T G T G C A C G A T A C T G