Information for 3-TAAAHCTTCACATTTC (Motif 3)

A C G T G C T A G C T A C G T A G T C A G A T C A G C T C G A T G T A C C T G A A T G C G C T A A C G T G A C T A C G T A T G C
Reverse Opposite:
A T C G C G T A C T G A C G T A C A G T A T C G A G C T A C T G G C T A C T G A C T A G C A G T C G A T C G A T C G A T G T C A
p-value:1e-14
log p-value:-3.318e+01
Information Content per bp:1.690
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.45%
Number of Background Sequences with motif16.1
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets36.4 +/- 15.6bp
Average Position of motif in Background56.3 +/- 21.9bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TBX20/MA0689.1/Jaspar

Match Rank:1
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:TAAAHCTTCACATTTC
-----CTTCACACCTA
 A C G T G C T A G C T A C G T A G T C A G A T C A G C T C G A T G T A C C T G A A T G C G C T A A C G T G A C T A C G T A T G C
A C G T A C G T A C G T A C G T A C G T A G T C G C A T G C A T G T A C G T C A T G A C G T C A G T A C A G T C G A C T G C T A

TBX21/MA0690.1/Jaspar

Match Rank:2
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:TAAAHCTTCACATTTC
------TTCACACCTT
 A C G T G C T A G C T A C G T A G T C A G A T C A G C T C G A T G T A C C T G A A T G C G C T A A C G T G A C T A C G T A T G C
A C G T A C G T A C G T A C G T A C G T A C G T C G A T A G C T T G A C C T G A G T A C T C G A T G A C G A T C G A C T G A C T

TBR1/MA0802.1/Jaspar

Match Rank:3
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:TAAAHCTTCACATTTC
-----TTTCACACCT-
 A C G T G C T A G C T A C G T A G T C A G A T C A G C T C G A T G T A C C T G A A T G C G C T A A C G T G A C T A C G T A T G C
A C G T A C G T A C G T A C G T A C G T C G A T C G A T G A C T T G A C C T G A T A G C T C G A T A G C G A T C G A C T A C G T

EOMES/MA0800.1/Jaspar

Match Rank:4
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:TAAAHCTTCACATTTC
---NTTTTCACACCTT
 A C G T G C T A G C T A C G T A G T C A G A T C A G C T C G A T G T A C C T G A A T G C G C T A A C G T G A C T A C G T A T G C
A C G T A C G T A C G T C T G A G C A T C A G T C G A T A G C T T G A C C T G A A G T C T C G A T G A C G A T C G A C T G A C T

TBX1/MA0805.1/Jaspar

Match Rank:5
Score:0.56
Offset:7
Orientation:reverse strand
Alignment:TAAAHCTTCACATTTC
-------TCACACCT-
 A C G T G C T A G C T A C G T A G T C A G A T C A G C T C G A T G T A C C T G A A T G C G C T A A C G T G A C T A C G T A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C C T G A A T G C T C G A A G T C A G T C G A C T A C G T

PB0013.1_Eomes_1/Jaspar

Match Rank:6
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:TAAAHCTTCACATTTC---
--NNTTTTCACACCTTNNN
 A C G T G C T A G C T A C G T A G T C A G A T C A G C T C G A T G T A C C T G A A T G C G C T A A C G T G A C T A C G T A T G C A C G T A C G T A C G T
A C G T A C G T C T G A C T G A C G A T C A G T C A G T A G C T T G A C C T G A A G T C C T G A T A G C G A T C G A C T G A C T C G A T A G C T T G A C

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:7
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:TAAAHCTTCACATTTC
-----KTTCACACCT-
 A C G T G C T A G C T A C G T A G T C A G A T C A G C T C G A T G T A C C T G A A T G C G C T A A C G T G A C T A C G T A T G C
A C G T A C G T A C G T A C G T A C G T C A G T C A G T A C G T T A G C G C T A A G T C C T G A G T A C G A T C G C A T A C G T

TBX15/MA0803.1/Jaspar

Match Rank:8
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:TAAAHCTTCACATTTC
-------TCACACCT-
 A C G T G C T A G C T A C G T A G T C A G A T C A G C T C G A T G T A C C T G A A T G C G C T A A C G T G A C T A C G T A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T T G A C T C G A A T G C T G C A A G T C G A T C G A C T A C G T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:9
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:TAAAHCTTCACATTTC
------TTMACACCTT
 A C G T G C T A G C T A C G T A G T C A G A T C A G C T C G A T G T A C C T G A A T G C G C T A A C G T G A C T A C G T A T G C
A C G T A C G T A C G T A C G T A C G T A C G T C A G T G A C T G T A C C T G A A T G C T C G A T A G C G T A C G A C T G A C T

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:10
Score:0.53
Offset:5
Orientation:forward strand
Alignment:TAAAHCTTCACATTTC
-----ATTAACACCT-
 A C G T G C T A G C T A C G T A G T C A G A T C A G C T C G A T G T A C C T G A A T G C G C T A A C G T G A C T A C G T A T G C
A C G T A C G T A C G T A C G T A C G T G C T A G A C T G A C T T G C A C G T A A G T C C G T A T A G C G A T C G A C T A C G T