Information for 13-TGAATACTACATA (Motif 26)

A C G T A C T G C G T A G T C A A C G T C T G A A T G C A G C T C G T A A G T C C G T A A C G T C T G A
Reverse Opposite:
A G C T C G T A A C G T A C T G C G A T C T G A A T C G A G C T C G T A A C G T A C G T A G T C C G T A
p-value:1e-8
log p-value:-1.877e+01
Information Content per bp:1.910
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif4.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets55.6 +/- 18.4bp
Average Position of motif in Background64.1 +/- 30.5bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-TGAATACTACATA-
ATGAATWATTCATGA
 A C G T A C G T A C T G C G T A G T C A A C G T C T G A A T G C A G C T C G T A A G T C C G T A A C G T C T G A A C G T
G T C A A C G T C T A G G T C A C G T A G C A T C G T A C G T A G C A T C A G T A G T C C G T A C A G T C T A G C T G A

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:2
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:TGAATACTACATA
TGAATTATGCAT-
 A C G T A C T G C G T A G T C A A C G T C T G A A T G C A G C T C G T A A G T C C G T A A C G T C T G A
C G A T C T A G G T C A G C T A C G A T G C A T G C T A C G A T C A T G G A T C G C T A C G A T A C G T

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:3
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-TGAATACTACATA-
ATGCATWATGCATRW
 A C G T A C G T A C T G C G T A G T C A A C G T C T G A A T G C A G C T C G T A A G T C C G T A A C G T C T G A A C G T
C G T A A C G T A C T G G T A C C G T A A C G T C G T A C G T A A C G T A C T G A G T C C G T A A C G T C T G A G C A T

PB0096.1_Zfp187_1/Jaspar

Match Rank:4
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TGAATACTACATA-
TTATTAGTACATAN
 A C G T A C T G C G T A G T C A A C G T C T G A A T G C A G C T C G T A A G T C C G T A A C G T C T G A A C G T
C A G T C G A T C G T A G A C T C G A T T C G A C T A G G A C T G C T A A G T C C T G A A G C T C T G A T C G A

POU4F1/MA0790.1/Jaspar

Match Rank:5
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TGAATACTACATA
ATGAATAATTAATG
 A C G T A C G T A C T G C G T A G T C A A C G T C T G A A T G C A G C T C G T A A G T C C G T A A C G T C T G A
T C G A G A C T C T A G G T C A G C T A C G A T C G T A C G T A C G A T C G A T C G T A T C G A G A C T C A T G

POU4F3/MA0791.1/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TGAATACTACATA--
ATGCATAATTAATGAG
 A C G T A C G T A C T G C G T A G T C A A C G T C T G A A T G C A G C T C G T A A G T C C G T A A C G T C T G A A C G T A C G T
C T G A A G C T C A T G G T A C G C T A C G A T C G T A C G T A C G A T C G A T C G T A C T G A G A C T C A T G G T C A T C A G

POU4F2/MA0683.1/Jaspar

Match Rank:7
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TGAATACTACATA--
ATGCATAATTAATGAG
 A C G T A C G T A C T G C G T A G T C A A C G T C T G A A T G C A G C T C G T A A G T C C G T A A C G T C T G A A C G T A C G T
C T G A G A C T C T A G G T A C G C T A C G A T C G T A G C T A G C A T G C A T C T G A T C G A A C G T A C T G C T G A T C A G

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TGAATACTACATA
ATGAATATTC----
 A C G T A C G T A C T G C G T A G T C A A C G T C T G A A T G C A G C T C G T A A G T C C G T A A C G T C T G A
G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T A C G T A C G T A C G T

PB0178.1_Sox8_2/Jaspar

Match Rank:9
Score:0.55
Offset:-7
Orientation:reverse strand
Alignment:-------TGAATACTACATA
NNTNTCATGAATGT------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A G T C A A C G T C T G A A T G C A G C T C G T A A G T C C G T A A C G T C T G A
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T A C G T A C G T A C G T A C G T A C G T A C G T

PH0087.1_Irx6/Jaspar

Match Rank:10
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:TGAATACTACATA------
--ANTTNTACATGTANTTN
 A C G T A C T G C G T A G T C A A C G T C T G A A T G C A G C T C G T A A G T C C G T A A C G T C T G A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C T A C G A T C G A T G C A T A C G T C G A T C G T A A G T C C G T A G C A T C T A G C G A T G C T A G A C T C G A T C G A T C G A T