Information for 6-CCWCTGGTGTCTTTAA (Motif 7)

A G T C A G T C C G A T A T G C C G A T A C T G A T C G C G A T A T C G A C G T A G T C A C G T A C G T G A C T C T G A G T C A
Reverse Opposite:
A C G T A G C T C G T A G T C A C G T A C T A G C G T A A T G C C G T A A T G C G T A C C G T A T A C G G C T A C T A G C T A G
p-value:1e-12
log p-value:-2.917e+01
Information Content per bp:1.724
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.48%
Number of Background Sequences with motif13.3
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets38.6 +/- 21.2bp
Average Position of motif in Background66.4 +/- 17.6bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0164.1_Six4/Jaspar

Match Rank:1
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CCWCTGGTGTCTTTAA-
TNNNNGGTGTCATNTNT
 A G T C A G T C C G A T A T G C C G A T A C T G A T C G C G A T A T C G A C G T A G T C A C G T A C G T G A C T C T G A G T C A A C G T
A G C T T C A G T C G A C A G T C T G A T C A G A C T G A C G T C T A G A C G T G T A C C T G A C G A T C A G T G A C T G T C A C A G T

HOXC10/MA0905.1/Jaspar

Match Rank:2
Score:0.55
Offset:8
Orientation:forward strand
Alignment:CCWCTGGTGTCTTTAA--
--------GTCGTAAAAT
 A G T C A G T C C G A T A T G C C G A T A C T G A T C G C G A T A T C G A C G T A G T C A C G T A C G T G A C T C T G A G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T

PH0065.1_Hoxc10/Jaspar

Match Rank:3
Score:0.55
Offset:4
Orientation:forward strand
Alignment:CCWCTGGTGTCTTTAA----
----TAAAGTCGTAAAACGT
 A G T C A G T C C G A T A T G C C G A T A C T G A T C G C G A T A T C G A C G T A G T C A C G T A C G T G A C T C T G A G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T C G T A C G T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C A T C G A C G T

PH0073.1_Hoxc9/Jaspar

Match Rank:4
Score:0.53
Offset:4
Orientation:forward strand
Alignment:CCWCTGGTGTCTTTAA----
----GGAGGTCATTAATTAT
 A G T C A G T C C G A T A T G C C G A T A C T G A T C G C G A T A T C G A C G T A G T C A C G T A C G T G A C T C T G A G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C A G C A T G T C G A C T A G T C A G G A C T G T A C C T G A G C A T G C A T C G T A G C T A G A C T G A C T C G T A A C G T

HOXD11/MA0908.1/Jaspar

Match Rank:5
Score:0.53
Offset:8
Orientation:forward strand
Alignment:CCWCTGGTGTCTTTAA--
--------GTCGTAAAAA
 A G T C A G T C C G A T A T G C C G A T A C T G A T C G C G A T A T C G A C G T A G T C A C G T A C G T G A C T C T G A G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A

HOXC11/MA0651.1/Jaspar

Match Rank:6
Score:0.52
Offset:7
Orientation:forward strand
Alignment:CCWCTGGTGTCTTTAA--
-------GGTCGTAAAAT
 A G T C A G T C C G A T A T G C C G A T A C T G A T C G C G A T A T C G A C G T A G T C A C G T A C G T G A C T C T G A G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C A G G A C T G A T C C T A G C G A T C G T A C G T A G T C A G C T A G C A T

Hoxa11/MA0911.1/Jaspar

Match Rank:7
Score:0.52
Offset:7
Orientation:forward strand
Alignment:CCWCTGGTGTCTTTAA---
-------GGTCGTAAAATT
 A G T C A G T C C G A T A T G C C G A T A C T G A T C G C G A T A T C G A C G T A G T C A C G T A C G T G A C T C T G A G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C A G A G C T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C A T C G A T

PB0060.1_Smad3_1/Jaspar

Match Rank:8
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:CCWCTGGTGTCTTTAA---
--NNTNNTGTCTGGNNTNG
 A G T C A G T C C G A T A T G C C G A T A C T G A T C G C G A T A T C G A C G T A G T C A C G T A C G T G A C T C T G A G T C A A C G T A C G T A C G T
A C G T A C G T C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

PH0047.1_Hoxa11/Jaspar

Match Rank:9
Score:0.52
Offset:4
Orientation:forward strand
Alignment:CCWCTGGTGTCTTTAA----
----TAAAGTCGTAAAACAT
 A G T C A G T C C G A T A T G C C G A T A C T G A T C G C G A T A T C G A C G T A G T C A C G T A C G T G A C T C T G A G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T C T G A G C T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C C T G A A C G T

PH0076.1_Hoxd11/Jaspar

Match Rank:10
Score:0.52
Offset:4
Orientation:forward strand
Alignment:CCWCTGGTGTCTTTAA-----
----TAAGGTCGTAAAATCCT
 A G T C A G T C C G A T A T G C C G A T A C T G A T C G C G A T A T C G A C G T A G T C A C G T A C G T G A C T C T G A G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T G C T A C T G A T C A G T C A G A G C T G A T C C T A G A C G T C G T A C G T A G C T A G C T A G C A T G A T C G A T C C A G T