Information for 3-GCATGGGGATGCA (Motif 12)

A C T G G A T C G T C A C G A T A C T G C A T G C T A G A C T G C G T A C G A T A C T G A G T C C G T A
Reverse Opposite:
C G A T A C T G G T A C C G T A A C G T A G T C A G T C G T A C G T A C C G T A A C G T C A T G A G T C
p-value:1e-11
log p-value:-2.579e+01
Information Content per bp:1.796
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.32%
Number of Background Sequences with motif12.1
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets63.4 +/- 23.1bp
Average Position of motif in Background71.4 +/- 19.6bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MZF1/MA0056.1/Jaspar

Match Rank:1
Score:0.58
Offset:3
Orientation:forward strand
Alignment:GCATGGGGATGCA
---TGGGGA----
 A C T G G A T C G T C A C G A T A C T G C A T G C T A G A C T G C G T A C G A T A C T G A G T C C G T A
A C G T A C G T A C G T A G C T A C T G C T A G A C T G A C T G C T G A A C G T A C G T A C G T A C G T

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:2
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GCATGGGGATGCA---
-CTTTGTTATGCAAAT
 A C T G G A T C G T C A C G A T A C T G C A T G C T A G A C T G C G T A C G A T A C T G A G T C C G T A A C G T A C G T A C G T
A C G T A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GCATGGGGATGCA---
-CATTGTTATGCAAAT
 A C T G G A T C G T C A C G A T A C T G C A T G C T A G A C T G C G T A C G A T A C T G A G T C C G T A A C G T A C G T A C G T
A C G T G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GCATGGGGATGCA-
CTCATGAATATTCAT
 A C G T A C T G G A T C G T C A C G A T A C T G C A T G C T A G A C T G C G T A C G A T A C T G A G T C C G T A A C G T
T A G C G A C T G A T C C G T A A C G T T C A G G T C A C G T A A C G T C G T A C G A T A C G T A G T C C G T A C G A T

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:5
Score:0.53
Offset:2
Orientation:forward strand
Alignment:GCATGGGGATGCA----
--AAGGKGRCGCAGGCA
 A C T G G A T C G T C A C G A T A C T G C A T G C T A G A C T G C G T A C G A T A C T G A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T T G C A C G T A A C T G T C A G C A G T C A T G T C A G G A T C T A C G A G T C T G C A A C T G A C T G T G A C G T C A

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:6
Score:0.53
Offset:5
Orientation:forward strand
Alignment:GCATGGGGATGCA--
-----MTGATGCAAT
 A C T G G A T C G T C A C G A T A C T G C A T G C T A G A C T G C G T A C G A T A C T G A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G C A A G C T C A T G C G T A A G C T A C T G G A T C G T C A C G T A A G C T

PB0077.1_Spdef_1/Jaspar

Match Rank:7
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--GCATGGGGATGCA-
AANNATCCGGATGTNN
 A C G T A C G T A C T G G A T C G T C A C G A T A C T G C A T G C T A G A C T G C G T A C G A T A C T G A G T C C G T A A C G T
T C G A C T G A C T G A C G T A C G T A G A C T T A G C T G A C A C T G A C T G C G T A G C A T T C A G G A C T C T G A A G T C

CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:8
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----GCATGGGGATGCA--
NTNATGCAAYMNNHTGMAAY
 A C G T A C G T A C G T A C G T A C G T A C T G G A T C G T C A C G A T A C T G C A T G C T A G A C T G C G T A C G A T A C T G A G T C C G T A A C G T A C G T
T G C A G C A T C G A T C G T A C A G T A C T G G T A C C G T A C T G A A G C T G T C A A C T G C T A G G T C A C G A T A C T G G T A C T G C A C G T A A G C T

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:9
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:GCATGGGGATGCA--
AYATGYATATGCATR
 A C T G G A T C G T C A C G A T A C T G C A T G C T A G A C T G C G T A C G A T A C T G A G T C C G T A A C G T A C G T
C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G C A T C T A G

SPIC/MA0687.1/Jaspar

Match Rank:10
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-GCATGGGGATGCA
AAAAAGAGGAAGTA
 A C G T A C T G G A T C G T C A C G A T A C T G C A T G C T A G A C T G C G T A C G A T A C T G A G T C C G T A
G T C A C T G A G T C A G T C A C G T A T A C G T G C A A T C G C A T G G C T A T G C A C T A G G C A T G T C A